View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21045_high_9 (Length: 477)
Name: NF21045_high_9
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 4535163 - 4534715
Alignment:
| Q |
18 |
aattcatacataatttaaatatgattatcttcttcaaaatgaagtcatcgaccaacgcataccatttaatccactttagttccattacagaccattagct |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
4535163 |
aattcatatataatttaaatatgattatcttcttccaaataaagtcatcgtccaacacataccatttaatcaactttagttccattacacaacattagct |
4535064 |
T |
|
| Q |
118 |
aataatcatcaataaaccacattagataaaagtcacacaaacaatattacatacataaaagagaaactaatcaaaaaagttcttctcaacaatagattaa |
217 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4535063 |
aataatcatcgaataaccacagtagataaaagtcaca--aacaatattacatagataaaagagaaactaatcaaaaaagttcttctcaacaatagattaa |
4534966 |
T |
|
| Q |
218 |
aaatctcttactgattcaaatgtcactacaaaagaaatgaatgggagctatcaataaatataaatttagatttttgataaataaaattgagcaatgaata |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
4534965 |
aaatctcttgatgattcaaatgtcactacaaaagaaatgaatggaa-ctatcaatgaatataaattcagattttttataaataaaattgagcaatgaata |
4534867 |
T |
|
| Q |
318 |
agttgaggatctgaggatggaaaggtcgagatcttgtctgtcatcaacgtcattctgcaggagtttccagcgagatcaatacggtgattaaaaacaacct |
417 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
4534866 |
agttgagcatctaaggatggaaaggtcgagatcttgtctgtcatcaacgtcattctgcaggagtttcctgcgagatcaatacggtgattaaaagcaacct |
4534767 |
T |
|
| Q |
418 |
acagaaaagcaaattataaatatttatactacatagagtacataagtataat |
469 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4534766 |
acagaaaagccaattataaatatttatactacatagagtacataagtataat |
4534715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 48867564 - 48867392
Alignment:
| Q |
18 |
aattcatacataatttaaatatgattatcttcttcaaaatgaa---gtcatcgaccaacgcataccatttaatccactttagttccattacagaccatta |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||| || |||||||||||| ||| | |||| || ||||||||||||||||| | ||||| |
|
|
| T |
48867564 |
aattcatagataatttaaatatgattatctcctttcaaataaaaaagtcatcgaccaat--ataacttttactcgactttagttccattacacaacatta |
48867467 |
T |
|
| Q |
115 |
gctaataatcatcaataaaccacattagataaaagtcacacaaac-aatattacatacataaaagagaaactaat |
188 |
Q |
| |
|
|||||||||||||| ||||| ||||| | || ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
48867466 |
actaataatcatcaaataaccatattagttgaacgtcacacaaacaaatattacatagataaaagagaaactaat |
48867392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 305
Target Start/End: Original strand, 24061896 - 24062043
Alignment:
| Q |
160 |
aatattacatacataaaagagaaactaatcaaaaaa-gttcttctcaacaatagattaaaaatctctt-actgattcaaatgtcactacaaaagaaatga |
257 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||| ||| || ||||||||||||| || ||||||| | | | |||||| ||||| ||||||||||| |
|
|
| T |
24061896 |
aatattacataaataaacgataaactaataaaaaaaagtttttttcaacaatagattcaacatctcttgatggctccaaatgccactaaaaaagaaatga |
24061995 |
T |
|
| Q |
258 |
atgggagctatcaataaatataaatttagatttttgataaataaaatt |
305 |
Q |
| |
|
|||| | ||| ||| |||||||||||| |||| | ||||||||||| |
|
|
| T |
24061996 |
atggaaaatattaatgaatataaatttatatttctagtaaataaaatt |
24062043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 3975832 - 3975695
Alignment:
| Q |
90 |
actttagttccattacagaccattagctaataatcatcaataaaccacattagataaaagtcacacaaaca-atattacatacataaaagagaaactaat |
188 |
Q |
| |
|
||||||||||||||||| | |||| | |||||| | ||||| ||||||||| ||||||||||| ||||| ||| | ||| |||||||| ||| || | |
|
|
| T |
3975832 |
actttagttccattacacaacattgaccaataataacaaataa-ccacattagttaaaagtcacaaaaacatatacttcattgataaaagataaagtagt |
3975734 |
T |
|
| Q |
189 |
caaaaaagtt-cttctcaacaatagattaaaaatctctt |
226 |
Q |
| |
|
||||||| || ||||||||||||||||| || ||||||| |
|
|
| T |
3975733 |
caaaaaaattacttctcaacaatagattcaacatctctt |
3975695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University