View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21045_low_11 (Length: 468)
Name: NF21045_low_11
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 14206960 - 14207404
Alignment:
| Q |
19 |
ggctaccacattatctcctttgtcagtaaggattgaaattttgggttttgcacttcttttccattcctatatcataatccatccatgtaaggacaaaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
14206960 |
ggctaccacattatctcctttgtcagtaaggattgaaattttgggttttgcacttcttttccattcctatatcataattcatccatgtaaggacaacaca |
14207059 |
T |
|
| Q |
119 |
aagcnnnnnnn-aagctcaaaagttttagttcttaccttgaaggttgttccttcaacatgcttacttgcactatagagccaatctctataggctacaatt |
217 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14207060 |
aagcttttttttaagctcaaaagttttagttctcaccttgaatgttgttccttcaacatgcttacttgcactatagagccaatctctataggctacaatt |
14207159 |
T |
|
| Q |
218 |
gaattgattggtttactttgcttcctccaacttcttgtgggtggtttgatttcaagttccctattgtgtgttgtgttatactcctaaaataaagtatcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14207160 |
gaattgattggtttactttgcttcctccaacttcttgtaggtggtttgatttctagttccctattgtgtgttgtgttatactcctaaaataaag---cag |
14207256 |
T |
|
| Q |
318 |
atcatgattgtattttgttgattccataatgtatagtatgtcaaacaacaccagaa-------agnnnnnnnctaacctgtatgcttgagtctgtgcaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| | |
|
|
| T |
14207257 |
atcatgattgtattttgttgattccataat-----gtatgtcaaacaacaccagaagaaaaagaaaaaaaaactaacctgtatgcttgagtctgtgcagc |
14207351 |
T |
|
| Q |
411 |
caatatataactttccatgatccactgccatgcacttcccatgcttacctttg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
14207352 |
caatatataactttccatgatccactgccatgcattttccatgcttacctttg |
14207404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University