View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_13 (Length: 458)
Name: NF21045_low_13
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Original strand, 47291832 - 47292275
Alignment:
| Q |
19 |
taagagactgaaacaaccaacttaactaaaacagatgcaaagcagcctaaggctaaa-----taaaacagctgataataataaaaacaaagaataggggc |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47291832 |
taagagactgaaacaaccaacttaactaaaacagatgcaaagcagcctaaggctaaattaaataaaacagctgataataataaaaacaaagaataggggc |
47291931 |
T |
|
| Q |
114 |
tgatagaattataatattaaatcctagatactagttaatatatctcacaaacaataggcctttcattatcattatatagcacacaagcccccaactttat |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47291932 |
tgatagaattataatattaaatcctagatactagttaatatatctcacaaacaataggcctttcattatcattatatagcacacaagcccccaactttat |
47292031 |
T |
|
| Q |
214 |
ttaacatgaatcacgacattacaaactacaacaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatct |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292032 |
ttaacaggaatcacgacattacaaactacaacaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatct |
47292131 |
T |
|
| Q |
314 |
catccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtacattcaaagtttcttctccatttatattcttatatgggacgatata |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292132 |
catccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatata |
47292231 |
T |
|
| Q |
414 |
ggttgatccaggaaatgttccagccccaccctatgctactccac |
457 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
47292232 |
ggttgatccaggaaatgttccagccccaccttttgcaactccac |
47292275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 43 - 457
Target Start/End: Original strand, 47298459 - 47298882
Alignment:
| Q |
43 |
actaaaacagatgcaaagcagcctaaggctaaataaaacagctgataataataaaaacaaagaataggggctgatagaattataatattaaatcctagat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| ||| |||| || |
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|
| T |
47298459 |
actaaaacagatgcaaagcagcctaaggctaaataaaacagccgaaaataataaaaacaaagaataggggctgacagaattataatatgaaaacctatat |
47298558 |
T |
|
| Q |
143 |
actagttaatatatctcacaaacaat-aggcctttcattatcattatatagcacacaagcccccaactttatttaacatgaatcacgaca--------tt |
233 |
Q |
| |
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||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
47298559 |
actagttaatatatcacaataacaaacaggtctttcattatcattatatagcacacaagcccccaactttatttaacagcaatcacgacagtacaatttt |
47298658 |
T |
|
| Q |
234 |
acaaactacaacaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaac |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47298659 |
acaaactacaacaaactataaggtagacatcgcaaaactaggagcactcaatgtaggatgattttggttaccaagcatctcatccaactcttttgcaaac |
47298758 |
T |
|
| Q |
334 |
ctcttcatatcttcagagggcaaacaaattggtacattcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttc |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | || |
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| T |
47298759 |
ctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccttttatattcttatatgggacgatataggttgctccaggaaaaggtc |
47298858 |
T |
|
| Q |
434 |
cagccccaccctatgctactccac |
457 |
Q |
| |
|
|||||||||| | ||| ||||||| |
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|
| T |
47298859 |
cagccccaccttttgcaactccac |
47298882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 47243241 - 47243159
Alignment:
| Q |
285 |
tgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta |
367 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||| |||||||||| |
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| T |
47243241 |
tgtaggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggta |
47243159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 287 - 442
Target Start/End: Complemental strand, 47268143 - 47267988
Alignment:
| Q |
287 |
taggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtacattcaaagtttcttctcc |
386 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | ||| | ||| ||||||||| |
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| T |
47268143 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
47268044 |
T |
|
| Q |
387 |
atttatattcttatatgggacgatataggttgatccaggaaatgttccagccccac |
442 |
Q |
| |
|
| || |||||||| ||||| |||||||| || ||||||||| | |||||||||| |
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|
| T |
47268043 |
ttctacattcttatgtgggatgatataggctgctccaggaaaaggcccagccccac |
47267988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 367
Target Start/End: Complemental strand, 47257409 - 47257286
Alignment:
| Q |
244 |
acaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
343 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||| ||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||| |
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|
| T |
47257409 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatat |
47257310 |
T |
|
| Q |
344 |
cttcagagggcaaacaaattggta |
367 |
Q |
| |
|
|||||| ||||| |||||||||| |
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|
| T |
47257309 |
cttcaggaggcaagcaaattggta |
47257286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 352
Target Start/End: Complemental strand, 47284150 - 47284043
Alignment:
| Q |
245 |
caaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatc |
344 |
Q |
| |
|
|||||||||||||||| || ||||| || || || ||| |||||| | |||||| ||||||| ||||| ||| ||||||| ||||||||||||||| | |
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|
| T |
47284150 |
caaactataaggtagagatgacaaaactaggaccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataac |
47284051 |
T |
|
| Q |
345 |
ttcagagg |
352 |
Q |
| |
|
|||||||| |
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|
| T |
47284050 |
ttcagagg |
47284043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 47279517 - 47279450
Alignment:
| Q |
285 |
tgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagg |
352 |
Q |
| |
|
|||||| | |||||||||||||| ||||| ||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
47279517 |
tgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataacttcagagg |
47279450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 365
Target Start/End: Complemental strand, 32731949 - 32731828
Alignment:
| Q |
244 |
acaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
343 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||| ||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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|
| T |
32731949 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggacaattttggttaccaagcatatcatctaactctttagcaaacctcttcatat |
32731850 |
T |
|
| Q |
344 |
cttcagagggcaaacaaattgg |
365 |
Q |
| |
|
|||||| |||||| |||||||| |
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|
| T |
32731849 |
cttcagggggcaagcaaattgg |
32731828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 20519904 - 20519835
Alignment:
| Q |
298 |
tggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta |
367 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| ||||||||| |
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|
| T |
20519904 |
tggttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggta |
20519835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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