View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_15 (Length: 433)
Name: NF21045_low_15
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Complemental strand, 853674 - 853273
Alignment:
| Q |
14 |
gcataggtgttgatgacaagtgatacagcaactttggagatggatgatgagggtaagctaggaacaattctgataacaaacgatgatggtattgatgctc |
113 |
Q |
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| T |
853674 |
gcataggtgttgatgacaagtgatacagcaactttggagatggatgatgagggtaagctaggaacaattctgataacaaacgatgatggtattgatgctc |
853575 |
T |
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| Q |
114 |
ctggtttgagagctttggttgaatccctggttaacaccaatctttttaatgtcttggtctgtgtgctcctgataggtaagtaaatcaggttccgtcatga |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
853574 |
ctggtttgagagctttggttgaatccctcgttaacaccaatctttttaatgtcttggtctgtg--ctcctgataggtaagtaaatcaggttccgtcatga |
853477 |
T |
|
| Q |
214 |
tcgaattcatatagtcaaactcatctataaatgtttgattgagattaaattttttaaaattttaaactctatatgatctcggtccaacggtcattgatgt |
313 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
853476 |
tcaaattcatatagtcaaacacatctataaatgtttgattgagattaaatttttttaaattttaaactctatatgatctcggtccaacggtcattgatgt |
853377 |
T |
|
| Q |
314 |
ggctgagtgtatgaatatgagattctttcatgtttggtacatactttgtacctgtttcaaaaattgttgtaagacttaaatatccttttatgttagttta |
413 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |
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| T |
853376 |
ggctaagtgtatgaatatgagattctttcatgtttggtacatactttgtacctgttttaaaaattgttgcaaaacttaaatatccttttatgttagttta |
853277 |
T |
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| Q |
414 |
aaat |
417 |
Q |
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|||| |
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| T |
853276 |
aaat |
853273 |
T |
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