View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_16 (Length: 427)
Name: NF21045_low_16
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 39736753 - 39736346
Alignment:
| Q |
1 |
atggagcacctcatcttatacaaacaatcatactataaggtgctagagtttcttttctatttcattgaaatataattgatggtgtaggagaaagtggtat |
100 |
Q |
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| T |
39736753 |
atggagcacctcatcttatacaaacaatcatactataaggtgctagagtttcttttctatttcattgaaatataattgatggtgtaggagaaagtggtat |
39736654 |
T |
|
| Q |
101 |
atggtttaaaggagtcagttttccatgactcattgagcacaatgcttagcatcactggtcctccaaaagcttcatatagaaatattctctttgacaatgt |
200 |
Q |
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| T |
39736653 |
atggtttaaaggagtcagttttccatgactcattgagcacaatgcttagcatcactggtccttcaaaagcttcatatagaaatattctctttgacaatgt |
39736554 |
T |
|
| Q |
201 |
ttcaactttgaatatgaaattacaaaaacagatcgtacattgatgaatgtgttagcattcttgtcctcaactatctaagtggatgtaacgttaagacaga |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39736553 |
ttcaactttgaatatgaaattacaaaaacagaccgtacattgatgaatgtgttagcattcttgtcctcaactatcttagtggatgtaacgttaagacaga |
39736454 |
T |
|
| Q |
301 |
atcatgcaaggaaatgaaaacatttatgaaatggaaattgtatttgtggtcgtctttaaagagaaaaggagctatccacattttgttatgatttttgggt |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39736453 |
atcatgcaaggaaatgaaaacatttataaaatggaaattgtatttgtggtcgtctttaaagagaaaaggagctatccacattttgttatgatttttgggt |
39736354 |
T |
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| Q |
401 |
gcatatga |
408 |
Q |
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|||||||| |
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| T |
39736353 |
gcatatga |
39736346 |
T |
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