View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21045_low_17 (Length: 424)
Name: NF21045_low_17
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_17 |
 | |
|
| [»] scaffold0283 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 41245578 - 41245974
Alignment:
| Q |
19 |
aagaaaaacagaattggaatggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41245578 |
aagaaaaacagaattggaatggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatga |
41245677 |
T |
|
| Q |
119 |
gtgtgcaaataattcaaccctttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41245678 |
gtgtgcaaataattcaaccctttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcc |
41245777 |
T |
|
| Q |
219 |
cacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41245778 |
cacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaa |
41245877 |
T |
|
| Q |
319 |
taacctcacttcagaataaagcctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattccttcttct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41245878 |
taacctcacttcagaataaagcctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctctattccttcttct |
41245974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 42725380 - 42725223
Alignment:
| Q |
47 |
acctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaa |
146 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||||||| |||||||| || || || || || ||||| || || | ||| | ||| |||| |||| |
|
|
| T |
42725380 |
acctggccaatgttcccattaacaaagatattactgcaattaagatctctgtggataatacagggatcatgtgtatgaagatactccaatccttcaagaa |
42725281 |
T |
|
| Q |
147 |
tctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctata |
204 |
Q |
| |
|
|| ||||||||||||| || ||||| || |||||||||| ||||||||||||||| |
|
|
| T |
42725280 |
cttgttttgaccatttcttaaacgccttaatcgaaacatgtcgatgtttcttcctata |
42725223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 45 - 414
Target Start/End: Original strand, 22263637 - 22264006
Alignment:
| Q |
45 |
ttacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcag |
144 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| || |
|
|
| T |
22263637 |
ttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaacccttccaa |
22263736 |
T |
|
| Q |
145 |
aatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaa |
244 |
Q |
| |
|
|| || | ||||| |||||||| ||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22263737 |
tatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaa |
22263836 |
T |
|
| Q |
245 |
ttaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctct |
344 |
Q |
| |
|
|| || ||||| | | ||| ||||||||| | |||||| ||||||||||||||||||||| | || | | | ||||||||||| ||||| || | |
|
|
| T |
22263837 |
ttcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtcttt |
22263936 |
T |
|
| Q |
345 |
ctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattccttcttc |
414 |
Q |
| |
|
| | ||| ||||| |||| | ||| ||||| ||||| ||||| ||||||||||| || ||||||||||| |
|
|
| T |
22263937 |
caatcattgcagggtcattgctgaaatttctgagcttaacttgattccatgctacttctattccttcttc |
22264006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 45 - 414
Target Start/End: Complemental strand, 22270203 - 22269834
Alignment:
| Q |
45 |
ttacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcag |
144 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| || |
|
|
| T |
22270203 |
ttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaacccttccaa |
22270104 |
T |
|
| Q |
145 |
aatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaa |
244 |
Q |
| |
|
|| || | ||||| |||||||| ||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22270103 |
tatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaa |
22270004 |
T |
|
| Q |
245 |
ttaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctct |
344 |
Q |
| |
|
|| || ||||| | | ||| ||||||||| | |||||| ||||||||||||||||||||| | || | | | ||||||||||| ||||| || | |
|
|
| T |
22270003 |
ttcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtcttt |
22269904 |
T |
|
| Q |
345 |
ctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattccttcttc |
414 |
Q |
| |
|
| | ||| ||||| |||| | ||| ||||| ||||| ||||| ||||||||||| || ||||||||||| |
|
|
| T |
22269903 |
caatcattgcagggtcattgctgaaatttctgagcttaacttgattccatgctacttctattccttcttc |
22269834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 39 - 342
Target Start/End: Original strand, 45874200 - 45874503
Alignment:
| Q |
39 |
ggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccc |
138 |
Q |
| |
|
||||| ||||||||||| ||| ||||| | ||||||||| |||||||||||||||||||||||||| || || |||||| ||||||||||||||||| |
|
|
| T |
45874200 |
ggaaatttacctggccagtatttccattgataaacacattgctgcaattgagatctctatgaatgatacatggatcatgaacatgcaaataattcaaccc |
45874299 |
T |
|
| Q |
139 |
tttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtg |
238 |
Q |
| |
|
|| || ||| ||| | ||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || ||| |
|
|
| T |
45874300 |
ttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtg |
45874399 |
T |
|
| Q |
239 |
atgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaa |
338 |
Q |
| |
|
||||||||||| |||| | ||||| ||||||||| ||||| |||||||||||| |||| ||| |||||| | || || |||||||| |||| |
|
|
| T |
45874400 |
atgaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaagcaatctaacttcagagtaaa |
45874499 |
T |
|
| Q |
339 |
gcct |
342 |
Q |
| |
|
|||| |
|
|
| T |
45874500 |
gcct |
45874503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 68 - 415
Target Start/End: Original strand, 10082862 - 10083209
Alignment:
| Q |
68 |
acaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaatctgccttgaccatttcttca |
167 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| | ||||| ||||||| |
|
|
| T |
10082862 |
acaaaaacattactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataattcaaccctttcaaaatctgcttagaccacttcttca |
10082961 |
T |
|
| Q |
168 |
atgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatc |
267 |
Q |
| |
|
| || | | ||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || || || | |||||| |
|
|
| T |
10082962 |
aagcttgaagagaaacatgcttatgtttcttcctatattccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtattatgatcatcatc |
10083061 |
T |
|
| Q |
268 |
gctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcacag |
367 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||| |||| |||||| | ||| ||||||||||| ||||| || || | ||| ||||| |||| | | |
|
|
| T |
10083062 |
cctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagtaatctcacttcagagtaaagtctatcaatcattgcagggtcattgctg |
10083161 |
T |
|
| Q |
368 |
aagtttcttagcttcacttggttccatgctacctcaattccttcttct |
415 |
Q |
| |
|
|| || | ||||| ||||| ||||| ||||| || |||||||||||| |
|
|
| T |
10083162 |
aaattccgaagcttaacttgattccaagctacttctattccttcttct |
10083209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 19354 - 19197
Alignment:
| Q |
47 |
acctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaa |
146 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||||||| |||||||| || || || || || ||||| || || | ||| | ||| |||| |||| |
|
|
| T |
19354 |
acctggccaatgttcccattaacaaagatattactgcaattaagatctctgtggataatacagggatcatgtgtatgaagatactccaatccttcaagaa |
19255 |
T |
|
| Q |
147 |
tctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctata |
204 |
Q |
| |
|
|| ||||||||||||| || ||||| || |||||||||| ||||||||||||||| |
|
|
| T |
19254 |
cttgttttgaccatttcttaaacgccttaatcgaaacatgtcgatgtttcttcctata |
19197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 20625809 - 20625849
Alignment:
| Q |
113 |
tcatgagtgtgcaaataattcaaccctttcagaatctgcct |
153 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20625809 |
tcatgaatgtgcaaataattcaaccctttcaaaatctgcct |
20625849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University