View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_2 (Length: 791)
Name: NF21045_low_2
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 15 - 779
Target Start/End: Complemental strand, 48896437 - 48895693
Alignment:
| Q |
15 |
aattcttgctaccttcagcataaatctttctcgaatttgtatgcatggatcaaatgcttcatgaatattctcaagttattcaatgatggaccaatctcac |
114 |
Q |
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| T |
48896437 |
aattcttgttaccttcagcataaatctttctcgaatttgtatgcatggatcaaatgcttcatgaatattctcaagttattcaatgatggaccaatctcac |
48896338 |
T |
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| Q |
115 |
aaactttatttgcaagatccctccatcacattctctcaagattgttttctcgaaatgtcaggtagcaaaattaacaatcattagaattcaaatgaaactc |
214 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48896337 |
aaaattt---tgcaagatccctccatcacattctctcaagattgttttctcgaaatgtcaggtagcaaaattaacaatcattaaaattcaaatgaaactc |
48896241 |
T |
|
| Q |
215 |
tttcagataaattatttattgactctctctttactgttttgacaaagctttcaaatatgaaggtttgccattggtgtcacttggattgctgggtccatta |
314 |
Q |
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| T |
48896240 |
tttcagataaattatttattgactctctctttactgttttgacaaagctttcaaatatgaaggtttgccattggtgtcacttggattgttgggtccatta |
48896141 |
T |
|
| Q |
315 |
ccatnnnnnnngaagtaagattaattctcttgaagtttagaacatgacataatcaaatttcatgtatgataaaattccatcatcaatttcctcgttcaaa |
414 |
Q |
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| T |
48896140 |
ccataaaaaaagaagtaagatcaattcttttgaagtttagaacattacataatcaaatttcatgtatgataaaattccatcatcaatttcctctttcaaa |
48896041 |
T |
|
| Q |
415 |
aagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacataatctcaaaagattagactctcttgaacaaattaattttagttgcacta |
514 |
Q |
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| T |
48896040 |
aagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacataa----------------tctcttgaacaaattaattttagttgcacta |
48895957 |
T |
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| Q |
515 |
aattatgccctgaatcccgttcaaaagagaactatcttgtgagtattatcttgagaaatatctcgttgagaactcaaattcctcaccaactcatgcattt |
614 |
Q |
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| T |
48895956 |
aattatgccctgaatcccgttcaaaagagaactatcttgtgagtattatcttgagaaatatctcgttgagaactcaaattcctcaccaactcatgcattt |
48895857 |
T |
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| Q |
615 |
tgaaaacattccatcatttctattctctctttctttcctacaactcctaatagctacgatcattctcataatacccattctgctaacaggggcaaacact |
714 |
Q |
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| T |
48895856 |
tgaaaacattccatcatttctattctctctttctttcctacaactcctaatagctacgatcattctcataatacccattctgctaacaggggcaaacact |
48895757 |
T |
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| Q |
715 |
tgagtataattttactccatgctcctatttctgcatgctcatgacttgcaacttttatctctgct |
779 |
Q |
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| T |
48895756 |
tgagtataa-tttactccatgctcctatttctgcatgctcatgacttgcaacttttatctctgct |
48895693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 366 - 492
Target Start/End: Complemental strand, 16216453 - 16216327
Alignment:
| Q |
366 |
atcaaatttcatgtatgataaaattccatcatcaatttcctcgttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacat |
465 |
Q |
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| T |
16216453 |
atcaaatttcttgtatggaaaaattccattatcagtttcttcaatgaaaaatctcaagagtcttgttttggctgataattttttcaatggaagtgttcct |
16216354 |
T |
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| Q |
466 |
aatctcaaaagattagactctcttgaa |
492 |
Q |
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| T |
16216353 |
aatctcaaaagattaacctctcttgaa |
16216327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 209 - 501
Target Start/End: Complemental strand, 16963862 - 16963573
Alignment:
| Q |
209 |
aaactctttcagataaattatttattgactctctctttactgttttgacaaagctttcaaatatgaaggttt-gccattggtgtcacttggattgctggg |
307 |
Q |
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| T |
16963862 |
aaactctttctgaaagattttctattgattctttttttactgttgtgacaaagctttcaaagatgaaggttttgtcattggtttcacttggtttgtgggg |
16963763 |
T |
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| Q |
308 |
tccattaccatnnnnnnngaagtaagattaattctcttgaagtttagaacatgacataatcaaatttcatgtatgataaaattccatcatcaatttcctc |
407 |
Q |
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| T |
16963762 |
tccactaccttccaagatta-gtaggtttaagtcacttgaagttttcaacatttcat---caaatttcttgtatggaaaaattccatcatcagtttcttc |
16963667 |
T |
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| Q |
408 |
gttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacataatctcaaaagattagactctcttgaacaaattaat |
501 |
Q |
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| T |
16963666 |
aatgaaaagtcttaagagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctctcttgaagagattaat |
16963573 |
T |
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