View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21045_low_20 (Length: 410)

Name: NF21045_low_20
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21045_low_20
NF21045_low_20
[»] chr2 (6 HSPs)
chr2 (12-394)||(13961419-13961801)
chr2 (175-209)||(14385136-14385170)
chr2 (175-209)||(28539417-28539451)
chr2 (175-209)||(35550149-35550183)
chr2 (175-208)||(15803234-15803267)
chr2 (175-207)||(1270695-1270727)
[»] chr7 (3 HSPs)
chr7 (175-209)||(33872111-33872145)
chr7 (175-209)||(38505335-38505369)
chr7 (174-207)||(6746572-6746605)
[»] chr6 (2 HSPs)
chr6 (175-209)||(15615723-15615757)
chr6 (175-207)||(32222058-32222090)
[»] chr5 (1 HSPs)
chr5 (175-209)||(14570041-14570075)
[»] chr4 (1 HSPs)
chr4 (175-209)||(55509933-55509967)
[»] chr3 (2 HSPs)
chr3 (175-209)||(47359365-47359399)
chr3 (175-209)||(49183741-49183775)
[»] scaffold0119 (2 HSPs)
scaffold0119 (175-208)||(37177-37210)
scaffold0119 (175-207)||(30510-30542)
[»] chr8 (4 HSPs)
chr8 (175-208)||(12506188-12506221)
chr8 (176-209)||(12595370-12595403)
chr8 (175-208)||(31305777-31305810)
chr8 (175-207)||(8228599-8228631)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 13961801 - 13961419
Alignment:
Q  12 atgaatcttcaatgcagctaccgtgagaattggaatgaagatgatagtgaaagtatcccaaccaaaagaaccacttgaagccaaatattacctgttacaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13961801 atgaatcttcaatgcagctaccgtgagaattggaatgaagatgatagtgaaagtatcccaaccaaaagaaccacttgaagccaaatattacctgttacaa 13961702  T
Q  112 gaaaatattatttaggtgatgaaggaaattcatgtatcaaaattattaatttatcatttatcgtttggagggtttatatgaaatcttcaaatttaatcac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13961701 gaaaatattatttaggtgatgaaggaaattcatgtatcaaaatcattaatttatcatttatcgtttggagggtttatatgaaatcttcaaatttaatcac 13961602  T
Q  212 catgatcataagcaccaagtgatcatagaccttttaaagattctgaacctaagctttataataaacgagtaaggtcgagttgaactttcaatgggctaaa 311  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13961601 catgatcataagcaccaagtgatcatagaccttttaaagagtctgaacctaagctttataataaacgagtaaggtcgagttgaactttcaatgggctaaa 13961502  T
Q  312 tcataagcccctctcgagtgacttgacttattcccaccattatcaacaacatataaagagaaacaatatttatacaactactt 394  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13961501 tcataagcccctctgaagtgacttgacttattcccaccattatcaacaacatataaagagaaacaagatttatacaactactt 13961419  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 14385136 - 14385170
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||| |||||||||||||||||||||    
T  14385136 tttggagggtttacatgaaatcttcaaatttaatc 14385170  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 28539451 - 28539417
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  28539451 tttggagggtttatatgaattcttcaaatttaatc 28539417  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 35550183 - 35550149
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  35550183 tttggagggtttatatgaattcttcaaatttaatc 35550149  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 15803234 - 15803267
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaat 208  Q
    ||||||||||||||||||| ||||||||||||||    
T  15803234 tttggagggtttatatgaattcttcaaatttaat 15803267  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 1270727 - 1270695
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaa 207  Q
    ||||||||||||||||||| |||||||||||||    
T  1270727 tttggagggtttatatgaattcttcaaatttaa 1270695  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 33872145 - 33872111
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  33872145 tttggagggtttatatgaattcttcaaatttaatc 33872111  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 38505369 - 38505335
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  38505369 tttggagggtttatatgaattcttcaaatttaatc 38505335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 6746605 - 6746572
Alignment:
Q  174 gtttggagggtttatatgaaatcttcaaatttaa 207  Q
    |||||||||||||||||||| |||||||||||||    
T  6746605 gtttggagggtttatatgaattcttcaaatttaa 6746572  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 15615723 - 15615757
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  15615723 tttggagggtttatatgaattcttcaaatttaatc 15615757  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 32222058 - 32222090
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaa 207  Q
    ||||||||||||||||||| |||||||||||||    
T  32222058 tttggagggtttatatgaattcttcaaatttaa 32222090  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 14570075 - 14570041
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  14570075 tttggagggtttatatgaattcttcaaatttaatc 14570041  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 55509933 - 55509967
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  55509933 tttggagggtttatatgaattcttcaaatttaatc 55509967  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 47359365 - 47359399
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  47359365 tttggagggtttatatgaattcttcaaatttaatc 47359399  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 49183741 - 49183775
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaatc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  49183741 tttggagggtttatatgaattcttcaaatttaatc 49183775  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 37177 - 37210
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaat 208  Q
    ||||||||||||||||||| ||||||||||||||    
T  37177 tttggagggtttatatgaattcttcaaatttaat 37210  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 30510 - 30542
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaa 207  Q
    ||||||||||||||||||| |||||||||||||    
T  30510 tttggagggtttatatgaattcttcaaatttaa 30542  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 12506221 - 12506188
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaat 208  Q
    ||||||||||||||||||| ||||||||||||||    
T  12506221 tttggagggtttatatgaattcttcaaatttaat 12506188  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 12595370 - 12595403
Alignment:
Q  176 ttggagggtttatatgaaatcttcaaatttaatc 209  Q
    |||||||||||||||||| |||||||||||||||    
T  12595370 ttggagggtttatatgaattcttcaaatttaatc 12595403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 31305810 - 31305777
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaat 208  Q
    ||||||||||||||||||| ||||||||||||||    
T  31305810 tttggagggtttatatgaattcttcaaatttaat 31305777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 8228599 - 8228631
Alignment:
Q  175 tttggagggtttatatgaaatcttcaaatttaa 207  Q
    ||||||||||||||||||| |||||||||||||    
T  8228599 tttggagggtttatatgaattcttcaaatttaa 8228631  T

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