View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_24 (Length: 352)
Name: NF21045_low_24
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 30240247 - 30240574
Alignment:
| Q |
17 |
atgtcttaatcttgatttgagtggaagattgggtaaaaggtctcaagatcagatcatatacttacggctttcaaattacgatgtagatgacactttctat |
116 |
Q |
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| T |
30240247 |
atgtcttaatcttgatttgagtggaagattgggtaaaaggtgtcaagatcagatcatatacttacggctttcaaattacgatgtagatgacacttgctat |
30240346 |
T |
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| Q |
117 |
gatcatgataattcttgtcaacaaagtcaaaggaagatgtatactcattctgatcttacggtctggttaagttatgcggagctccctaatactcctacta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30240347 |
gatcatgataattcttgtcaacaaagtcaaaggaagatgtatactcattctgatcttacggtctggttaagttatgcggagctccctaatactcctacta |
30240446 |
T |
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| Q |
217 |
gatattatgatgt------tcatgataatgataatgattattattgtccaagtctatgtgacagtctagagtatgattttgattatttactcgaactaga |
310 |
Q |
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| T |
30240447 |
gatattatgatgttgatgataatgataatgataatgattattattgtccaagtctatgtgacagtctagagtatgattttgattatttactcgaactata |
30240546 |
T |
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| Q |
311 |
tgaaaatgaaaatttgaatggttcatct |
338 |
Q |
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| T |
30240547 |
tgaaaatgaaaatttggatggttcatct |
30240574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 30236852 - 30236969
Alignment:
| Q |
17 |
atgtcttaatcttgatttgagtggaagattgggtaaaaggtctcaagatcagatcatatacttacggctttcaaattacgatgtagatgacactttctat |
116 |
Q |
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|||||||||||| ||||||||||||| | |||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| || || ||| |
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| T |
30236852 |
atgtcttaatctagatttgagtggaaaactggggaaaaggtatcaagatcaaatcatatatttacggctttcaaattacgatgtagatggcaattggtat |
30236951 |
T |
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| Q |
117 |
gatcatgataattcttgt |
134 |
Q |
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|||||||||||||||||| |
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| T |
30236952 |
gatcatgataattcttgt |
30236969 |
T |
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