View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_25 (Length: 352)
Name: NF21045_low_25
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 18245504 - 18245296
Alignment:
| Q |
17 |
tttggttctactatatatagagagtggaatggtgaatatgttattactattgttattgaataatgttgaatttattcaacatggattgannnnnnngttg |
116 |
Q |
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| T |
18245504 |
tttggttctactatatatagagagtggaatggtgaatatgttattactattgttattgaataatgttgaatttattcaacatggatagatttttttgttg |
18245405 |
T |
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| Q |
117 |
aaaggatagatattttgaggtaggatttgttgttcacgtgaatgttgaacttttttcctttggataacaacaagaagtgtctttttgtttgaatccagga |
216 |
Q |
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| T |
18245404 |
aaaggatagatattttgaggtaggatttgttgttcacgtgaatgatgaacttttttcctttgaataacaacaataagtgtctttttgtttgaattcagga |
18245305 |
T |
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| Q |
217 |
caataggat |
225 |
Q |
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||||||||| |
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| T |
18245304 |
caataggat |
18245296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 18245253 - 18245145
Alignment:
| Q |
225 |
tcttcaagtggcatgttcctccaatttttagggttattatttgaattaacctctgttatataggacttggtggtgaaaaagtttgcaattgcttatg-tt |
323 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| || |
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| T |
18245253 |
tcttcaagttgcatgttcctccaatttttagggttattatttgaattaacctatgttatatagcact---tggtgaaaaagtttgcaattgcttatgttt |
18245157 |
T |
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| Q |
324 |
aagccatgcatc |
335 |
Q |
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||| |||||||| |
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| T |
18245156 |
aagtcatgcatc |
18245145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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