View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21045_low_30 (Length: 311)
Name: NF21045_low_30
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_30 |
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| [»] scaffold0277 (2 HSPs) |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: scaffold0277 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 8329 - 8613
Alignment:
| Q |
20 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcct---gtatccgcgatacatcggtaaagctctcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8329 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctccttttgtatccgcgatacatcggtaaagctctcc |
8428 |
T |
|
| Q |
117 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgaccttgcagtttgtattctttcatcaattaagtaatgcattttcttgatttcttctgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8429 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgaccttgcagtttgtattctttcatcaattaagtaatgcattttcttgatttcttctgt |
8528 |
T |
|
| Q |
217 |
ttcttcgccatctttggattttgaaggatcgaagaatcctccaacgatcacaagatttaccaaacttcttagtctcttgttcttc |
301 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8529 |
ttcttcgctatctttggattttgaaggatcgaagaatcctccaacgatcacaagatttaccaaacttcttagtctcttgttcttc |
8613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 17079 - 17363
Alignment:
| Q |
20 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcctgt---atccgcgatacatcggtaaagctctcc |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17079 |
cacagttcattgctgcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcctgttgtatccgcgatacatcggtaaagctctcc |
17178 |
T |
|
| Q |
117 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgaccttgcagtttgtattctttcatcaattaagtaatgcattttcttgatttcttctgt |
216 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17179 |
attgcgatattgatcagtttgagccgcaatccatctgaacttaccttgcagtttgtattctttcatcaattaagtaatgcattttcttgatttcttctgt |
17278 |
T |
|
| Q |
217 |
ttcttcgccatctttggattttgaaggatcgaagaatcctccaacgatcacaagatttaccaaacttcttagtctcttgttcttc |
301 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17279 |
ttcttcgctatctttggattttgaaggatcgaagaatcctccaacgatcacaagatttaccaaacttcttagtctcttgttcttc |
17363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 13013 - 12729
Alignment:
| Q |
20 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcct---gtatccgcgatacatcggtaaagctctcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13013 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctccttttgtatccgcgatacatcggtaaagctctcc |
12914 |
T |
|
| Q |
117 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgaccttgcagtttgtattctttcatcaattaagtaatgcattttcttgatttcttctgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12913 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgaccttgcagtttgtattcgttcatcaattaagtaatgcattttcttgatttcttctgt |
12814 |
T |
|
| Q |
217 |
ttcttcgccatctttggattttgaaggatcgaagaatcctccaacgatcacaagatttaccaaacttcttagtctcttgttcttc |
301 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813 |
ttctttgctatctttggattttgaaggatcgaagaatcctccaacgatcacaagatttaccaaacttcttagtctcttgttcttc |
12729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 28777961 - 28777681
Alignment:
| Q |
20 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcct---gtatccgcgatacatcggtaaagctctcc |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28777961 |
cacagttcattgcttcaataactgttagaccaaaagcttcatacaatgctggttgaacaaaagctccttttgtatccgcgatacatcggtaaagctctcc |
28777862 |
T |
|
| Q |
117 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgaccttgcagtttgtattctttcatcaattaagtaatgcattttcttgatttcttctgt |
216 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
28777861 |
attgagatatcaatcagtttgagcagcaatccatctgaactgaccttgcagtttgtattctttcatcaa----gtaatgcatcttcttgatttcttctgt |
28777766 |
T |
|
| Q |
217 |
ttcttcgccatctttggattttgaaggatcgaagaatcctccaacgatcacaagatttaccaaacttcttagtctcttgttcttc |
301 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||||| |
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| T |
28777765 |
ttcttcgctatctttggattttgaaggatcgaagaatcctccaacaattacaagatttactaaacttcttagtcgcttgttcttc |
28777681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 28799665 - 28799385
Alignment:
| Q |
20 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcct---gtatccgcgatacatcggtaaagctctcc |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28799665 |
cacagttcattgcttcaatcactgttagaccaaaagcttcatacaatgctggttgaacaaaagctccttttgtatccgcgatacatcggtaaagctctcc |
28799566 |
T |
|
| Q |
117 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgaccttgcagtttgtattctttcatcaattaagtaatgcattttcttgatttcttctgt |
216 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
28799565 |
gttgcgatatctgtcagtttgcgccgcaatccatctgaactgaccttgcagtttgtattctttcatc----aagtaatgcatcttcttgatttcttctgt |
28799470 |
T |
|
| Q |
217 |
ttcttcgccatctttggattttgaaggatcgaagaatcctccaacgatcacaagatttaccaaacttcttagtctcttgttcttc |
301 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||||| |
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|
| T |
28799469 |
ttcttctctatctttggattttgacggatcgaagaatcctccaacaattacaagatttactaaacttcttagtcgcttgttcttc |
28799385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 28783976 - 28783809
Alignment:
| Q |
20 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcct---gtatccgcgatacatcggtaaagctctcc |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28783976 |
cacagttcattgcttcaatcactgttagaccaaaagcttcatacaatgctggttgaacaaaagctccttttgtatccgcgatacatcggtaaagctctcc |
28783877 |
T |
|
| Q |
117 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgaccttgcagtttgtattctttcatca |
184 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783876 |
gttgcgatatctgtcagtttgcgctgcaatccatctgaactgaccttgcagtttgtattctttcatca |
28783809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 32777552 - 32777414
Alignment:
| Q |
20 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcc---tgtatccgcgatacatcggtaaagctctcc |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||| || || || ||||||||||| ||| || || || ||||| || |||||||| |
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|
| T |
32777552 |
cacagttcattgcttcaatgacagttaagccaaatgcttcatacaaagcaggctgcacaaaagctccctttgtgtcggcaatgcatcgatagagctctcc |
32777453 |
T |
|
| Q |
117 |
attgcgatatcgatcagtttgagccgcaatccatctgaa |
155 |
Q |
| |
|
|| |||||||||||||| || || |||||||||||||| |
|
|
| T |
32777452 |
gttacgatatcgatcagtctgcgcagcaatccatctgaa |
32777414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 29117654 - 29117798
Alignment:
| Q |
20 |
cacagttcattgcttcaatgactgttagaccaaaagcttcatacaatgctggttgaacaaaagctcc---tgtatccgcgatacatcggtaaagctctcc |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| || || || ||||| ||||| ||| || || ||| |||| ||||||||||| |
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|
| T |
29117654 |
cacagttcattgcttcaatgacagttagaccaaatgcttcatacaaagcaggctgcacaaatgctccctttgtgtcggcaataaatcgataaagctctcc |
29117753 |
T |
|
| Q |
117 |
attgcgatatcgatcagtttgagccgcaatccatctgaactgacc |
161 |
Q |
| |
|
||||||| || ||| || || || |||||||||| || ||||| |
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|
| T |
29117754 |
gttgcgatgtctatcggtctgtgcaacaatccatctaaattgacc |
29117798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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