View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21045_low_35 (Length: 286)

Name: NF21045_low_35
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21045_low_35
NF21045_low_35
[»] chr8 (3 HSPs)
chr8 (1-223)||(44687825-44688047)
chr8 (18-223)||(44679764-44679964)
chr8 (222-264)||(44688070-44688112)
[»] chr3 (1 HSPs)
chr3 (106-214)||(9344707-9344815)
[»] chr1 (1 HSPs)
chr1 (117-173)||(250561-250617)
[»] scaffold0455 (1 HSPs)
scaffold0455 (108-166)||(10832-10890)
[»] scaffold0038 (2 HSPs)
scaffold0038 (108-166)||(20293-20351)
scaffold0038 (110-192)||(20494-20576)
[»] chr6 (5 HSPs)
chr6 (108-166)||(28132926-28132984)
chr6 (110-192)||(28177229-28177311)
chr6 (108-166)||(28219795-28219853)
chr6 (110-192)||(28219996-28220078)
chr6 (106-166)||(7026662-7026722)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44687825 - 44688047
Alignment:
Q  1 aaagcgtttaaatatttggtgtgaatgacaccgaatttcaacagtagagcagattctctgctagggttttttgtttgtacgatggaaaagaagagaatag 100  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  44687825 aaagcgtttaaatgtttgttgtgaatgacaccgaatttcaacagtagagcagattctctgctagggttttttgtttttacgatggaaaagaagaggatag 44687924  T
Q  101 aagcttccatggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcgataaagatctcgatctcattagctttcc 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44687925 aagcttccatggcagaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcgataaagatctcgatctcattagctttcg 44688024  T
Q  201 atcggtttgttccatgtggcgcc 223  Q
    |||||||||||||||||||||||    
T  44688025 atcggtttgttccatgtggcgcc 44688047  T

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Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 44679764 - 44679964
Alignment:
Q  18 ggtgtgaatgacaccgaatttcaacagtagagcagattctctgctagggttttttgtttgtacgatggaaaagaagagaatagaagcttccatggcggag 117  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||     ||| ||||||||||||||||||| ||||||||||||||||    
T  44679764 ggtgtgaatgacaccaaatttcaacagtagagcagtttctctgttagggtttttt-----tactatggaaaagaagagaatagcagcttccatggcggag 44679858  T
Q  118 gtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcgataaagatctcgatctcattagctttccatcggtttgttccatgt 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  44679859 gtagattggtctgaacttccaaatgatcttgtcaatctgatatcgcaactattcgctaaagatctcgatctcattagctttcgatcggtttgttccatgt 44679958  T
Q  218 ggcgcc 223  Q
    ||||||    
T  44679959 ggcgcc 44679964  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 44688070 - 44688112
Alignment:
Q  222 ccatcagattatacccttcaaattaccaagtttttccacgaga 264  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  44688070 ccatcagattttacccttcaaattaccaagtttttccacgaga 44688112  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 9344815 - 9344707
Alignment:
Q  106 tccatggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcgataaagatctcgatctcattagctttccatcgg 205  Q
    |||||||| || | ||||||||||||||| ||||  |||||| ||||||| ||||||||||   |||| || || || ||||||||| |||||| ||| |    
T  9344815 tccatggcagatgcagattggtctgaactcccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcattcgctttcgatctg 9344716  T
Q  206 tttgttcca 214  Q
    |||||||||    
T  9344715 tttgttcca 9344707  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 250561 - 250617
Alignment:
Q  117 ggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcga 173  Q
    |||||||||||||||||||||||  || ||| | |||||||||||||||||||||||    
T  250561 ggtagattggtctgaacttccaaacgaccttttgaatctgatatcgcaactattcga 250617  T

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Target: scaffold0455 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 10832 - 10890
Alignment:
Q  108 catggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaac 166  Q
    |||||| |||| |||||||||| |||||||||  |||||| ||||||||||||| ||||    
T  10832 catggcagaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaac 10890  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 20293 - 20351
Alignment:
Q  108 catggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaac 166  Q
    |||||| |||| |||||||||| |||||||||  |||||| ||||||||||||| ||||    
T  20293 catggcagaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaac 20351  T

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Target: scaffold0038; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 20576 - 20494
Alignment:
Q  110 tggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcgataaagatctcgatctcatt 192  Q
    |||| |||| |||||||||| | |||||||  |||||| ||||||||||||| |||| | |||| || || ||||||||||||    
T  20576 tggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcatt 20494  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 28132926 - 28132984
Alignment:
Q  108 catggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaac 166  Q
    |||||| |||| |||||||||| |||||||||  |||||| ||||||||||||| ||||    
T  28132926 catggcagaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaac 28132984  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 28177311 - 28177229
Alignment:
Q  110 tggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcgataaagatctcgatctcatt 192  Q
    |||| |||| |||||||||| | |||||||  |||||| ||||||||||||| |||| | |||| || || ||||||||||||    
T  28177311 tggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcatt 28177229  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 28219795 - 28219853
Alignment:
Q  108 catggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaac 166  Q
    |||||| |||| |||||||||| |||||||||  |||||| ||||||||||||| ||||    
T  28219795 catggcagaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaac 28219853  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 28220078 - 28219996
Alignment:
Q  110 tggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcgataaagatctcgatctcatt 192  Q
    |||| |||| |||||||||| | |||||||  |||||| ||||||||||||| |||| | |||| || || ||||||||||||    
T  28220078 tggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcatt 28219996  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 7026722 - 7026662
Alignment:
Q  106 tccatggcggaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaac 166  Q
    |||||||||  ||| ||||||||| |||| ||||| || ||| ||||||||||||||||||    
T  7026722 tccatggcgacggttgattggtctaaactcccaacggagcttctcaatctgatatcgcaac 7026662  T

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