View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_41 (Length: 254)
Name: NF21045_low_41
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_41 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0256 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 16873484 - 16873727
Alignment:
| Q |
11 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16873484 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcctgctgggctggtttctgaagcacatgactgtctgtctgaactttattt |
16873583 |
T |
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| Q |
111 |
cggtggaaggttgaaagaattgctcgcacaaggagttgcgtggagtcgttatcataaaaagacttcagaacaggtactaaatcccatcttttttcaaatg |
210 |
Q |
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| T |
16873584 |
cggtggaaggttgaaagaattgcttgcacaaggagttgcgcggagtcgttatcataaaaagacttcagaacaggtactaaatcccatcttttttaaaatg |
16873683 |
T |
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| Q |
211 |
tatgtgcttacaatataagacgttcagtaatatatcattttaat |
254 |
Q |
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| T |
16873684 |
tatgtgcttacaatatatgatgttcagtaatatataattttaat |
16873727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 16571484 - 16571723
Alignment:
| Q |
11 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattt |
110 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16571484 |
cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgt----ctgaactttattc |
16571579 |
T |
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| Q |
111 |
cggtggaaggttgaaagaattgctcgcacaaggagttgcgtggagtcgttatcataaaaagacttcagaacaggtactaaatcccatcttttttcaaatg |
210 |
Q |
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| T |
16571580 |
tgctggaaggttgaaagaattgctcgcacaaggagttgcgcggagtcgttatcatgaaaagactccaaaacaggtactaaatcctatcttttttaaaatg |
16571679 |
T |
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| Q |
211 |
tatgtgcttacaatataagacgttcagtaatatatcattttaat |
254 |
Q |
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| T |
16571680 |
tatgtgcttacaatatatgatgttcagtaatatataattttaat |
16571723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 12235 - 11992
Alignment:
| Q |
11 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattt |
110 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12235 |
cacagatacgttttaacagggctatgtcatagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtcagtctgaactttattc |
12136 |
T |
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| Q |
111 |
cggtggaaggttgaaagaattgctcgcacaaggagttgcgtggagtcgttatcataaaaagacttcagaacaggtactaaatcccatcttttttcaaatg |
210 |
Q |
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| T |
12135 |
cggtggaaggttgaaagaattgctcatacaaggagttgcacagaatcgttatcatgaaaagactctagaacaggtactaaatcccatcttttttaaaatg |
12036 |
T |
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| Q |
211 |
tatgtgcttacaatataagacgttcagtaatatatcattttaat |
254 |
Q |
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||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
12035 |
tatgtgcttacaatatatggtgttcagtaatatataattttaat |
11992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 14465 - 14399
Alignment:
| Q |
11 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttc |
77 |
Q |
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| T |
14465 |
cacagatacattctaacagggctatgtcacaattaggtgtatgtgcttttcgtgatgggatggtttc |
14399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 32791581 - 32791778
Alignment:
| Q |
11 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattt |
110 |
Q |
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||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32791581 |
cacagatactttttaacagggctatgtcac-gttaggtctatgtgcttttcgtgctgggctgatttctgaagcacatgactgtctgtctgaactttatcc |
32791679 |
T |
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| Q |
111 |
cggtggaaggttgaaagaattgctcgcacaaggagttgcgtggagtcgttatcataaaaagacttcagaacaggtactaaatcccatcttttttcaaat |
209 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |||||||| || | ||||||||||||||| || |||||||||| |
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| T |
32791680 |
cggtggaagggtgaaagaattgctcgcacaaggagttgcacggagtcattatcatgaaaagactccaaagcaggtactaaatcccttcctttttcaaat |
32791778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 21627849 - 21628022
Alignment:
| Q |
21 |
ttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttatttcggtggaagg |
120 |
Q |
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| T |
21627849 |
ttttaacagggctatgtcacagttaggtctatgtgcttttcgtgctggactgatttctgaagcacatgaatgtctgtctgaactttatcccggtggaagg |
21627948 |
T |
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| Q |
121 |
ttgaaagaattgctcgcacaaggagttgcgtggagtcgttatcataaaaagacttcagaacaggtactaaatcc |
194 |
Q |
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||| |||||||||||||||||||||||| ||||| |||||||| |||| ||| ||||||||||| ||||||| |
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| T |
21627949 |
gtgagagaattgctcgcacaaggagttgcacggagttgttatcatgaaaaaactccagaacaggtattaaatcc |
21628022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 235836 - 235643
Alignment:
| Q |
11 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattt |
110 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |||| |||| |||| |||||||||| |
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| T |
235836 |
cacaaatactttttaacagggctatgtcacagttaggtctatgtgcttttcgggttgggctggtttctgaagcgcatggctgtttgtcggaactttattc |
235737 |
T |
|
| Q |
111 |
cggtggaaggttgaaagaattgctcgcacaaggagttgcgtggagtcgttatcataaaaagacttcagaacaggtactaaatcccatctttttt |
204 |
Q |
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||||| | ||||||||||||| || ||||||||| | ||| ||||||||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
235736 |
tggtgggcgtgtgaaagaattgcttgcgcaaggagtttcacagagccgttatcatgaaaagactccagaacaggtactaaatcccagctttttt |
235643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 48300259 - 48300068
Alignment:
| Q |
11 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattt |
110 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||| |
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| T |
48300259 |
cacagatactctttaacagggctatgtcacagttaggtctatgtgcttttcgtgttggcctggtttctgaagcacatggctgtttgtctgaactttattc |
48300160 |
T |
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| Q |
111 |
cggtggaaggttgaaagaattgctcgcacaaggagttgcgtggagtcgttatcataaaaagacttcagaacaggtactaaatcccatctttt |
202 |
Q |
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|||||| || |||||||| |||| |||||||||||| | || ||||||||| |||||||| ||||||||||||| ||||||| ||||| |
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| T |
48300159 |
tggtggacgggtgaaagaactgcttgcacaaggagtttcacagaaccgttatcatgaaaagactccagaacaggtactcaatcccagctttt |
48300068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 7389969 - 7390162
Alignment:
| Q |
11 |
cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattt |
110 |
Q |
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|||| |||| ||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
7389969 |
cacaaatactttttaacagggctatgtcacagttaggtctttgtgcttttcgggctgggctggtttctgaagcgcatggctgtttgtctgaactttattc |
7390068 |
T |
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| Q |
111 |
cggtggaaggttgaaagaattgctcgcacaaggagttgcgtggagtcgttatcataaaaagacttcagaacaggtactaaatcccatctttttt |
204 |
Q |
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|||||| || |||| |||||||| || ||||||||| | ||| ||||||||| ||||||| ||||||||||||||||||||| ||||||| |
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| T |
7390069 |
tggtggacgggtgaaggaattgcttgcgcaaggagtttcacagagccgttatcatgaaaagaccccagaacaggtactaaatcccagctttttt |
7390162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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