View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_45 (Length: 240)
Name: NF21045_low_45
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37076816 - 37077040
Alignment:
| Q |
1 |
ctttattgtatttctatacatatatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttttgagtgtatttatagtgaagcaa |
100 |
Q |
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| T |
37076816 |
ctttattgtatttctatacatatatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttttgagtatatttatagtgaagcaa |
37076915 |
T |
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| Q |
101 |
ttggtgggcacttaaaaaaccgatgaggatgatatatttgagcattgtccattatacatattgccttgaattttcaaatatttaaggcatcacctattgc |
200 |
Q |
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| T |
37076916 |
ttggtgggcacttaaaaaaccgatgaggatgatatctttgagcattgtccattatacatattgccttgaattttcaaatatttaaggcatcacctattgc |
37077015 |
T |
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| Q |
201 |
ttgtgctctcaaagaaagtggatac |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
37077016 |
ttgtgctctcaaagaaagtggatac |
37077040 |
T |
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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 47245048 - 47245110
Alignment:
| Q |
19 |
catatatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttttgag |
81 |
Q |
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| T |
47245048 |
catatatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttttgag |
47245110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 32733338 - 32733397
Alignment:
| Q |
22 |
atatagaatagtggaaatggaatattcctatgcaaatataaatataattaatcttttgagtgt |
84 |
Q |
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| T |
32733338 |
atatataatagtggaaatgga---ttcctatgcaaatataaatataattaatcttttgagtgt |
32733397 |
T |
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