View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_6 (Length: 602)
Name: NF21045_low_6
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 9 - 586
Target Start/End: Complemental strand, 40048409 - 40047832
Alignment:
| Q |
9 |
agaagaacacaaatcgtggacaacctaaactcacaactcatatcaccaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatc |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048409 |
agaacaacacaaatcgtggacaacctaaactcacaactcatatcagcaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatc |
40048310 |
T |
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| Q |
109 |
tcaaagcggggttcttcaactcactaaacgaaaacnnnnnnntcgaactattacaattccacattcttccacagtttgttgatagcaataactttgattc |
208 |
Q |
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||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048309 |
tcaaagcagggttcttcaactcgctaaacgaaaacaaaaaaatcgaactattacaattccacattcttccacagtttgttgatagcaataactttgattc |
40048210 |
T |
|
| Q |
209 |
tcttagtaaccctgttgagacagtggctggtaaagaccctttaaagcttccattgaacatcgaatcgtttggtaccagtgttagtctttcaactggtgtg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048209 |
tcttagtaaccctgttgagacagtggctggtaaagaccctttaaagcttccattgaacatcgaatcgtttggtaccagtgttagtctttcaactggtgtg |
40048110 |
T |
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| Q |
309 |
gttaatgctagtgttactggtgtagtctatcaagataacaagcttgctatatatcgtttggataaggttttgcttcctcttgatttctttgggactaagg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048109 |
gttaatgctagtgttactggtgtagtctatcaagataacaagcttgctatatatcgtttggataaggttttgcttcctcttgatttctttgggactaagg |
40048010 |
T |
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| Q |
409 |
cacctgctgctgctcctgttgcggaagcaatagcaccgaaagctgacaagacaaagtcttcttctgaagaagatgaggatgatacaacaacacaggatnn |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048009 |
cacctgctgctgctcctgttgcggaagcaatagcaccgaaagctgataagacaaagtcttcttctgaagaagatgaggatgatacaacaacacaggataa |
40047910 |
T |
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| Q |
509 |
nnnnngttctggagcaaatttacttggaattcaaggaacagcttatatatctattggagtagcttttgttgcagtggc |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40047909 |
aaaaagttctggagcaaatttacttggaattcaaggaacagcttatatatctattggagtagcttttgttgcagtggc |
40047832 |
T |
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