View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21045_low_8 (Length: 521)

Name: NF21045_low_8
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21045_low_8
NF21045_low_8
[»] chr3 (3 HSPs)
chr3 (16-521)||(51187960-51188467)
chr3 (23-74)||(42939951-42940002)
chr3 (21-67)||(6938175-6938221)
[»] chr2 (3 HSPs)
chr2 (23-74)||(17703001-17703052)
chr2 (16-74)||(37724229-37724287)
chr2 (16-74)||(43473007-43473065)
[»] chr7 (3 HSPs)
chr7 (21-74)||(36912090-36912143)
chr7 (21-75)||(40799972-40800026)
chr7 (481-521)||(36203995-36204036)
[»] chr1 (2 HSPs)
chr1 (15-75)||(30685507-30685567)
chr1 (21-75)||(11065987-11066041)
[»] chr5 (2 HSPs)
chr5 (16-74)||(1969488-1969546)
chr5 (21-74)||(15566480-15566533)
[»] chr8 (2 HSPs)
chr8 (16-73)||(4529840-4529897)
chr8 (482-521)||(18539133-18539173)


Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 51188467 - 51187960
Alignment:
Q  16 aatactacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaagtatttaatataggattcctaacatatgtttcattgaataaa 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51188467 aatactacattgaaaatcgaaaatgacattcattttcaaacaaattatttttgttaaagtatttaatataggattcctaacatatgtttcattgaataaa 51188368  T
Q  116 gtctttctaaaaacataaagacaacaaaatatgataattaacttttatatataaatattagtagtttgataactcatagttgcagagtggttgtagtact 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  51188367 gtctttctaaaaacataaagacaacaaaatatgataattaacttttatatataaatattagtagtttgataactcatagttgcagagtggctgtagtacc 51188268  T
Q  216 ttcctattatcactaaaatcttagaactttgattatctacagtgaagaaattaacgcattcggtacattcccagccgttggatcaagatctgatagtcca 315  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51188267 ttgctattatcactaaaatcttagaactttgattatctacggtgaagaaattaacgcattcggtacattcccagtcgttggatcaagatctgatagtcca 51188168  T
Q  316 aactttaagtt-tgtatttttatttttnnnnnnnnnnttatgcgataaaatttagtcggctgatcgcaatctaacgatcagattatgtcaaaatcgtgaa 414  Q
    |||||||||||  ||||||||||||||          |||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  51188167 aactttaagttcagtatttttatttttaaaaaaaaaattatgcgataaaatttagtcggccaatcgcaatctaacgatcaggttatgtcaaaatcgtgaa 51188068  T
Q  415 taagtcaatttcttgcatgaaattgaaggcaatctgatttcaaaacttagggttgtattaaataataggcttaatt-cacctttgacccctatctttcta 513  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||    
T  51188067 taagtcaatttcttgcatgaaattgaaggcaatctaatttcaaaacttagggttgtattaaataataggcttaattgcacttttgacctctatcttttta 51187968  T
Q  514 aaagttgc 521  Q
    ||||||||    
T  51187967 aaagttgc 51187960  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 42940002 - 42939951
Alignment:
Q  23 cattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaag 74  Q
    |||||||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  42940002 cattgaaaaatgaaaatgacattcattttgaaacaaattatttttgttaaag 42939951  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 6938175 - 6938221
Alignment:
Q  21 tacattgaaaatcgaaaacgacattcattttcaaacaaattattttt 67  Q
    |||||||||| | |||||||||||||||||| ||||||||| |||||    
T  6938175 tacattgaaagttgaaaacgacattcattttaaaacaaatttttttt 6938221  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 17703052 - 17703001
Alignment:
Q  23 cattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaag 74  Q
    |||||||||| ||||  |||||||||||| ||||||||||||||||||||||    
T  17703052 cattgaaaattgaaagtgacattcattttaaaacaaattatttttgttaaag 17703001  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 37724287 - 37724229
Alignment:
Q  16 aatactacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaag 74  Q
    |||| |||||||||||  ||||| |||||| ||||| |||||||||||||||| |||||    
T  37724287 aatagtacattgaaaagtgaaaatgacatttattttgaaacaaattatttttgctaaag 37724229  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 43473007 - 43473065
Alignment:
Q  16 aatactacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaag 74  Q
    |||| |||||||||||   |||| |||||||||||| ||| ||||||||||||||||||    
T  43473007 aatagtacattgaaaagttaaaatgacattcattttaaaataaattatttttgttaaag 43473065  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 36912143 - 36912090
Alignment:
Q  21 tacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaag 74  Q
    |||||||||| | |||||||||||||||||| ||||||||| |||||| |||||    
T  36912143 tacattgaaagttgaaaacgacattcattttgaaacaaattttttttgctaaag 36912090  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 40800026 - 40799972
Alignment:
Q  21 tacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaagt 75  Q
    |||||||||||  || || |||||||||||| |||||||||||||||| ||||||    
T  40800026 tacattgaaaagtgagaatgacattcattttgaaacaaattatttttgctaaagt 40799972  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 521
Target Start/End: Original strand, 36203995 - 36204036
Alignment:
Q  481 aggcttaatt-cacctttgacccctatctttctaaaagttgc 521  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  36203995 aggcttaattgcacttttgacccctatctttctaaaagttgc 36204036  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 30685567 - 30685507
Alignment:
Q  15 aaatactacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaagt 75  Q
    ||||| |||||||||||  || || |||||||||||| |||||||||||||||| ||||||    
T  30685567 aaatagtacattgaaaagtgagaatgacattcattttgaaacaaattatttttgctaaagt 30685507  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 11066041 - 11065987
Alignment:
Q  21 tacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaagt 75  Q
    |||||||||||  || || |||||||||||| |||||||||||||||| ||||||    
T  11066041 tacattgaaaagtgagaatgacattcattttgaaacaaattatttttgctaaagt 11065987  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 1969488 - 1969546
Alignment:
Q  16 aatactacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaag 74  Q
    |||| ||||||||||| | |||| |||| ||||||| |||||||||||||||| |||||    
T  1969488 aatagtacattgaaaagccaaaatgacactcattttgaaacaaattatttttgctaaag 1969546  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 15566533 - 15566480
Alignment:
Q  21 tacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaag 74  Q
    |||||||||| | |||||||||||| ||||| ||||||||| |||||| |||||    
T  15566533 tacattgaaagttgaaaacgacatttattttgaaacaaattttttttgctaaag 15566480  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 4529897 - 4529840
Alignment:
Q  16 aatactacattgaaaatcgaaaacgacattcattttcaaacaaattatttttgttaaa 73  Q
    |||| |||||||||||  || || |||||||||||| |||||||||||||||| ||||    
T  4529897 aatagtacattgaaaagtgagaatgacattcattttaaaacaaattatttttgctaaa 4529840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 521
Target Start/End: Original strand, 18539133 - 18539173
Alignment:
Q  482 ggcttaatt-cacctttgacccctatctttctaaaagttgc 521  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  18539133 ggcttaattgcacttttgacccctatctttctaaaagttgc 18539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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