View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_low_9 (Length: 512)
Name: NF21045_low_9
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Complemental strand, 48172583 - 48172101
Alignment:
| Q |
16 |
acaaaaaccatagaccagaatttatcctggtcaaagaaatttggatcctctttgacaagtctaaaggagcagaacaaacacaagatacattagagataaa |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172583 |
acaaaaaccaaagaccagaatttatcctggtcaaagaaatttggatcctctttgacaagtctaaaggagcagaacaaacacaagatacattagagataaa |
48172484 |
T |
|
| Q |
116 |
cagttcccaagaggaacaaaatcagctcaaactcagaaaactgtcacggtgtctggggtttgttgaatggtcgtaaaaaatgatgctttgttatgcataa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48172483 |
cagttcccaagaggaacaaaatcagctcaaactcagaaaactgtcacggtgtctggggtttgttgaatggtcgtaaaaaatgatgtgttgttatgcataa |
48172384 |
T |
|
| Q |
216 |
aactagccactagctcaagaatcaatgtgnnnnnnnaagcaaaaacaatcaacgttacactgcacgctctctgagtacacaatttggcagtttaataaag |
315 |
Q |
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|||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172383 |
aactagccaccagctcaagaatcaatgtgttttttttagtaaaaacaatcaacgttacactgcacgctctctgagtacacaatttggcagtttaataaag |
48172284 |
T |
|
| Q |
316 |
tagcagactacaagcccaacttttcccattcaatcatcttgacaaaagtatttgctttactttgggcaacgcctgcaaaatgtagttaagaacattagga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172283 |
tagcagactacaagcccaacttttcccattcaatcatcttgacaatagtatttgctttactttgggcaacgcctgcaaaatgtagttaagaacattagga |
48172184 |
T |
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| Q |
416 |
cagaataagaaatagtatggtagtagtagaaatatttatttagcacaacaaattattcaaactgttcccacaatatgttgttt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172183 |
cagaataagaaatagtatggtagtagtagaaatatttatttagcacaacaaattattcaaactgttcccacaatatgttgttt |
48172101 |
T |
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