View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21046_high_2 (Length: 426)
Name: NF21046_high_2
Description: NF21046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21046_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 39 - 426
Target Start/End: Original strand, 36209141 - 36209528
Alignment:
| Q |
39 |
attacaatcaagtttataaggaataaagaaaaaataatttcacaacccaactcatggcataattagataactgataaaaacaaagacaatgtctctcgaa |
138 |
Q |
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| T |
36209141 |
attacaatcaagtttataaggaataaagaaaaaataatttcacaaaccaaatcatggcataattagataactgataaaaacaaagacaatgtctctccaa |
36209240 |
T |
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| Q |
139 |
agtctttaatctctattcttcaagtaagaagaatctaggtttacaggataaagatcagtagttactgaagaagatgaagcagtccatggcccttccattg |
238 |
Q |
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| T |
36209241 |
agtctttaatctctattcttcaagtaagaagaatctaggtttacaggataaagatcagtagttactgaagaagatgaagcagtccatggcccttccattg |
36209340 |
T |
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| Q |
239 |
aaatactattgtcttggtaatgttttctcattgcttccattttcttctcatccaatacttcacttgactctaaaaccagctcctgaatagcaatttttcc |
338 |
Q |
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| T |
36209341 |
aaatactttggtcttggtaatgttttctcattgcttccattttcttctcatccaatacctcacttgattctaaaaccagttcttgaatagcaattttacc |
36209440 |
T |
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| Q |
339 |
ttctaacatgcttaccactgaagacattgctggcctaagtgatgaagtcacattagtgcataagagtgccacatttatcattatcatt |
426 |
Q |
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| T |
36209441 |
ttctaacatgcttaccactgaagacattgctggcctaagtgatgaagtcacattagtgcataagagtgccacatttatcattagcatt |
36209528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 31241579 - 31241631
Alignment:
| Q |
262 |
tttctcattgcttccattttcttctcatccaatacttcacttgactctaaaac |
314 |
Q |
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| T |
31241579 |
tttctcattgcttccaactttttctcatccattacttcacttgaatctgaaac |
31241631 |
T |
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