View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21046_high_7 (Length: 265)
Name: NF21046_high_7
Description: NF21046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21046_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 40960754 - 40960518
Alignment:
| Q |
18 |
ttgttgggtctgttatttatactgttgtagttatcaatgaggtaaatattaataactaaggagtggggaaattggttaaatttaacatggtgttaaatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960754 |
ttgttgggtctgttatttatactgttgtagttatcaatgaggtaaatattaataactaaggagtggggaaattggttaaatttaacatggtgttaaatac |
40960655 |
T |
|
| Q |
118 |
tgannnnnnnaatggtttgaaagataagttttgatattcttactcttcccctcataatattgtnnnnnnntggttgtattctctcaaaccgagttcaatt |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40960654 |
tgatttttttaatggtttgaaagataagttttgatattcttactcttcccctcataatattgt-aaaaaatggttgtattctctcaaaccgagttcaatt |
40960556 |
T |
|
| Q |
218 |
gatccatagcttgagtattattatcaaatctatttcat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40960555 |
gatccatagcttgagtattattatcaaatctatttcat |
40960518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University