View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21046_low_1 (Length: 448)
Name: NF21046_low_1
Description: NF21046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21046_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 55396605 - 55396186
Alignment:
| Q |
17 |
aagctgaagttaccaagcatctcaaagaaggtatgatgtcgtgaggtatgaccaacattgttgatatcattagtacggatgcagcgttgtgaagtagtag |
116 |
Q |
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| T |
55396605 |
aagctgaagttaccaagcatctcaaagaaggtatgatgtcgtgaggtatgaccaacattgttgatatcattagtacggatgcagcgttgtgaagtagtag |
55396506 |
T |
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| Q |
117 |
cacgagggacttgtctaggaagttttccaagaaagataggtttgaattgaagcataccagcaatggtgaggagaacagtagggtcatctggaacgagaga |
216 |
Q |
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| T |
55396505 |
cacgagggacttgtctaggaagttttccaagaaagataggtttgaattgaagcataccagcaatggtgaggagaacagtagggtcatctggaacgagaga |
55396406 |
T |
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| Q |
217 |
agcactgggaaggaccttgtgaccacgggaagcataaaaactaagaaatctttcccgtatggaatctccactcacacaattactatcattgtcttgcgag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55396405 |
agcactgggaaggaccttgtgaccacgggaagcataaaaactaagaaatctttcccgtatggaatctccactcacacaattactatcattgtcttgcgag |
55396306 |
T |
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| Q |
317 |
ttcggtgatgacaacgacgatgatgtacagaaggaaagaagaagacgacgacgtagatgtagttgtttgaaagagataaatcctcctcctgctgctgctg |
416 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
55396305 |
ttcggtgatgacaacgacgatgatgtacagaagggaagaagaagacgacgacgtagatgtagttgtttgaaagagataaatcctcctgctgctgctgctg |
55396206 |
T |
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| Q |
417 |
ctaatgtaacattcatattc |
436 |
Q |
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| T |
55396205 |
ctaatgtaacattcatattc |
55396186 |
T |
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