View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21046_low_10 (Length: 244)
Name: NF21046_low_10
Description: NF21046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21046_low_10 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 40897658 - 40897894
Alignment:
| Q |
10 |
ataaaaatggtgaacaaataataagtcaacatggatatgcagatctcacacacacac--gtgtttgagaaaaatggttggggagaggggaagagaatgac |
107 |
Q |
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| T |
40897658 |
ataaaaatggtgaacaaataataagtcaacatggatatgcagatctcacacacacacaagtgtttgagaaaaatggttggggggaggggaagagaatgac |
40897757 |
T |
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| Q |
108 |
atagagttgaattcaatttcttcaagatgcccaaaggatcccacatgacaaaagttaaattaagatgcttcaaattcaccatggagttacttcttctcca |
207 |
Q |
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| T |
40897758 |
atagagttgaattcaatttcttcaagatgcccaaaggatcccacatgacaaaagttaaattaagatgcttcaaattcaccatggagttacttcttctcca |
40897857 |
T |
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| Q |
208 |
tggaactacaatgccactctatcaccactcctactaa |
244 |
Q |
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| T |
40897858 |
tggaactacaatgccactctatcaccactcctactaa |
40897894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 44153003 - 44153241
Alignment:
| Q |
10 |
ataaaaatggtgaacaaataataagtcaacatggatatgcagatctcacacacacac----gtgtttgagaaaaatggttggggagaggggaagagaatg |
105 |
Q |
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| T |
44153003 |
ataaaaatggtgaacaaataataagtcaacatggatatgcagatctcacacacacacacaagtgtttgagaaaaatggttggggagaggggaagagaatg |
44153102 |
T |
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| Q |
106 |
acatagagttgaattcaatttcttcaagatgcccaaaggatcccacatgacaaaagttaaattaagatgcttcaaattcaccatggagttacttcttctc |
205 |
Q |
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| T |
44153103 |
acatagagttgaattcaatttcttcaagatgcccaaaggatcccacatgacaaaagttaaattaagatgcttcaaattcaccatggagttacttcttctc |
44153202 |
T |
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| Q |
206 |
catggaactacaatgccactctatcaccactcctactaa |
244 |
Q |
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| T |
44153203 |
catggaactacaatgccactctatcaccactcctactaa |
44153241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 40895167 - 40895129
Alignment:
| Q |
189 |
tggagttacttcttctccatggaactacaatgccactct |
227 |
Q |
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| T |
40895167 |
tggagttgcttcttctacatggaactacaatgccactct |
40895129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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