View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21046_low_3 (Length: 422)
Name: NF21046_low_3
Description: NF21046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21046_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Original strand, 4143013 - 4143427
Alignment:
| Q |
11 |
caaaggattttgagggtgttttatccattctattaacttagggtctgatagatccttcggcatagctaagtattgaacttggtgtgttttttcattgatt |
110 |
Q |
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| T |
4143013 |
caaaggattttgagggtgttttatccattctattaacttagggtctgatagatccttcggcatagctaagtattgaacttggtgtgttttttcattgatt |
4143112 |
T |
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| Q |
111 |
aatcctgtatacaacatatatataacaggttgttctccagggactattgtggctgagcctgagaagcaacttgtttcaccagcacaagttggttcaatag |
210 |
Q |
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| T |
4143113 |
aatcctgtatacaacatatatataacaggttgttctccagggactattgtggctgagcctgagaagcaacttgtttcaccagcacaagttggttcaatag |
4143212 |
T |
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| Q |
211 |
catgattcaaatgagtccaatttatgagatctttggatattgaatgaccccataccattttattcacaccaaagcttgctccatcagggttatgttggta |
310 |
Q |
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| T |
4143213 |
catgattcaaatgagtccaatttatgagatctttggatattgaatgaccccataccattttattcacaccaaagcttgctccatcagggttatgttggta |
4143312 |
T |
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| Q |
311 |
gaagaaatggtaaaatcctttatagtacattggtcctgaaatattatactaatcattagatcaa-----atatggaacatgacatatatttaattttcct |
405 |
Q |
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| T |
4143313 |
gaagaaatggtaaaatcctttatagtacattggtcctgaaatattatactaatcattagatcaaatttcatatggaacatgacatatatttaattttcct |
4143412 |
T |
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| Q |
406 |
ctagtcatatgtata |
420 |
Q |
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| T |
4143413 |
ctagtcatatgtata |
4143427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 4138453 - 4138604
Alignment:
| Q |
197 |
agttggttcaatagcatgattcaaatgagtccaatttatgagatctttggatattgaatgaccccataccattttattcacaccaaagcttgctccatca |
296 |
Q |
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| T |
4138453 |
agttggtacaatagcatcatttagatgagtccaatttatgagatcatttgatatagaatgaccccataccattttctcatgaccaaatgttgctgcatca |
4138552 |
T |
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| Q |
297 |
gggttatgttggtagaagaaatggtaaaatcctttatagtacattggtcctg |
348 |
Q |
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| T |
4138553 |
gggttatattggtagaataaatggtaaacacctttatagtacattggtcctg |
4138604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 4129737 - 4129811
Alignment:
| Q |
197 |
agttggttcaatagcatgattcaaatgagtccaatttatgagatctttggatattgaatgaccccataccatttt |
271 |
Q |
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| T |
4129737 |
agttggtacaatagcatcatttagatgagtccaatttatgagatcatttgatatagaatgaccccataccatttt |
4129811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 4130402 - 4130450
Alignment:
| Q |
300 |
ttatgttggtagaagaaatggtaaaatcctttatagtacattggtcctg |
348 |
Q |
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|||| ||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
4130402 |
ttatattggtagaataaatggtaaactcctttatagtacattggtcctg |
4130450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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