View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21046_low_5 (Length: 285)

Name: NF21046_low_5
Description: NF21046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21046_low_5
NF21046_low_5
[»] chr1 (5 HSPs)
chr1 (18-277)||(40689545-40689804)
chr1 (149-213)||(34710335-34710399)
chr1 (149-213)||(34713959-34714023)
chr1 (181-221)||(27509163-27509203)
chr1 (149-213)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (156-232)||(7687870-7687946)
chr7 (154-226)||(40243778-40243850)
[»] chr2 (2 HSPs)
chr2 (160-234)||(41234713-41234787)
chr2 (181-233)||(35505956-35506008)
[»] chr4 (1 HSPs)
chr4 (141-230)||(20926000-20926089)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 40689545 - 40689804
Alignment:
Q  18 acaaggacaagcaaaggaatcatcaacaaagaacaccgatgatttagatggtggaatgatgaactacacaaaatatagcagtagaaaattcatggaagct 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689545 acaaggacaagcaaaggaatcatcaacaaagaacactgatgatttagatggtggaatgatgaactacacaaaatatagcagtagaaaattcatggaagct 40689644  T
Q  118 gctactttggattctggaagagctggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689645 gctactttggattctggaagagctggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaa 40689744  T
Q  218 gtcacaagaaaccaaaagctttagcaattgctcaagagaaaaagcacttatatgatgatg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689745 gtcacaagaaaccaaaagctttagcaattgctcaagagaaaaagcacttatatgatgatg 40689804  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 34710335 - 34710399
Alignment:
Q  149 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 213  Q
    |||| |||| ||||||||||||||||| ||||||| |||||| |||||| ||||| |||||||||    
T  34710335 atgtgtatgcatgcaaaacatgcaacaaaacattcacttcatctcaagcacttggaggccataga 34710399  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 34713959 - 34714023
Alignment:
Q  149 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 213  Q
    |||| |||| ||||||||||||||| | ||| ||| ||||||||||||| ||||| |||||||||    
T  34713959 atgtgtatgcatgcaaaacatgcaaaaaaactttcacttcatttcaagcacttggaggccataga 34714023  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 27509203 - 27509163
Alignment:
Q  181 ttcccttcatttcaagcccttggtggccatagagcaagtca 221  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  27509203 ttcccttcattccaagcacttggtggacatagagcaagtca 27509163  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 34406640 - 34406576
Alignment:
Q  149 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 213  Q
    |||| |||| |||||||||||| |||| | | ||| ||||||||||||| ||||| |||||||||    
T  34406640 atgtgtatgcatgcaaaacatgtaacaaatctttcacttcatttcaagcacttggaggccataga 34406576  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 7687946 - 7687870
Alignment:
Q  156 tgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaa 232  Q
    |||||| |||||||| || |||  ||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  7687946 tgaatgtaaaacatgtaatagacaatttccttcatttcaagccctaggtggtcatagggcaagtcacaagaaaccaa 7687870  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 40243850 - 40243778
Alignment:
Q  154 tatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaaga 226  Q
    |||||||||||||| ||||||| || |||| | || ||||||||||||||||||||||| || || |||||||    
T  40243850 tatgaatgcaaaacgtgcaacaaaaaattctcatcttttcaagcccttggtggccatagggctagccacaaga 40243778  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 41234713 - 41234787
Alignment:
Q  160 tgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaa 234  Q
    |||||||||||||||| |  |||| |||| ||||||||  | ||||||||||||||||||||||||| |||||||    
T  41234713 tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaa 41234787  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 35505956 - 35506008
Alignment:
Q  181 ttcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaa 233  Q
    |||| ||||||||||||  | ||||| ||||||||||||||||||||||||||    
T  35505956 ttccattcatttcaagcgttgggtggacatagagcaagtcacaagaaaccaaa 35506008  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 20926089 - 20926000
Alignment:
Q  141 tggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaacc 230  Q
    |||||| ||| ||||||||||||||||||| |||||||| || ||||| ||||||||  | ||||| || || ||||||||||| |||||    
T  20926089 tggtttgtatatttatgaatgcaaaacatgtaacagaacttttccttcttttcaagctttgggtggtcacagggcaagtcacaaaaaacc 20926000  T

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