View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21047_high_1 (Length: 725)

Name: NF21047_high_1
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21047_high_1
NF21047_high_1
[»] chr2 (15 HSPs)
chr2 (331-682)||(15658539-15658891)
chr2 (331-454)||(35470285-35470407)
chr2 (12-90)||(15659133-15659211)
chr2 (337-409)||(8186308-8186380)
chr2 (491-563)||(15649766-15649838)
chr2 (331-455)||(29108749-29108873)
chr2 (562-681)||(15649302-15649428)
chr2 (331-388)||(45326701-45326758)
chr2 (336-409)||(25749683-25749756)
chr2 (331-415)||(6970470-6970554)
chr2 (332-420)||(28580399-28580487)
chr2 (377-456)||(16711859-16711938)
chr2 (335-422)||(32143613-32143700)
chr2 (270-304)||(15658918-15658952)
chr2 (356-414)||(33635700-33635758)
[»] chr4 (11 HSPs)
chr4 (331-456)||(1051754-1051879)
chr4 (331-420)||(3168397-3168486)
chr4 (331-411)||(1646593-1646673)
chr4 (334-417)||(33033220-33033303)
chr4 (335-451)||(49081279-49081395)
chr4 (331-451)||(7633155-7633274)
chr4 (341-420)||(47742774-47742853)
chr4 (331-392)||(40123775-40123837)
chr4 (340-413)||(36619910-36619983)
chr4 (335-392)||(37858419-37858476)
chr4 (345-402)||(50498895-50498952)
[»] chr5 (7 HSPs)
chr5 (331-455)||(9922923-9923046)
chr5 (331-421)||(35457339-35457424)
chr5 (331-427)||(33054089-33054185)
chr5 (337-393)||(38083950-38084006)
chr5 (336-407)||(8590130-8590201)
chr5 (336-402)||(932135-932201)
chr5 (374-420)||(26296450-26296496)
[»] chr1 (4 HSPs)
chr1 (331-420)||(6395467-6395556)
chr1 (331-420)||(19998561-19998650)
chr1 (340-420)||(963956-964036)
chr1 (270-304)||(48282859-48282893)
[»] chr8 (8 HSPs)
chr8 (331-453)||(7662280-7662402)
chr8 (335-453)||(8457527-8457645)
chr8 (335-440)||(34127641-34127747)
chr8 (331-446)||(4613369-4613483)
chr8 (340-457)||(42563157-42563274)
chr8 (356-455)||(44362257-44362356)
chr8 (341-456)||(16938864-16938979)
chr8 (335-388)||(41646466-41646518)
[»] chr6 (4 HSPs)
chr6 (331-455)||(8052175-8052299)
chr6 (335-407)||(29608465-29608537)
chr6 (374-430)||(2667077-2667133)
chr6 (335-454)||(19742110-19742228)
[»] chr3 (12 HSPs)
chr3 (331-420)||(14750337-14750426)
chr3 (331-420)||(55142316-55142405)
chr3 (336-414)||(34664271-34664349)
chr3 (341-388)||(4275515-4275562)
chr3 (331-382)||(30429402-30429453)
chr3 (336-415)||(40892801-40892880)
chr3 (334-407)||(37677368-37677441)
chr3 (356-422)||(9099173-9099239)
chr3 (270-304)||(36545128-36545162)
chr3 (270-304)||(36563152-36563186)
chr3 (335-389)||(39149166-39149220)
chr3 (335-388)||(32600684-32600737)
[»] chr7 (6 HSPs)
chr7 (331-456)||(25790097-25790221)
chr7 (361-420)||(30198321-30198380)
chr7 (331-420)||(8919386-8919476)
chr7 (270-304)||(37720503-37720537)
chr7 (356-458)||(45879077-45879179)
chr7 (354-431)||(6221091-6221168)
[»] scaffold0603 (1 HSPs)
scaffold0603 (356-407)||(7098-7149)
[»] scaffold0004 (1 HSPs)
scaffold0004 (331-380)||(351153-351202)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 331 - 682
Target Start/End: Complemental strand, 15658891 - 15658539
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  15658891 tataatttgcattcaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattccttaatcagtgcccc 15658792  T
Q  431 ggaggcaccgattaacgtttccctttttattaaacttcagtaatatttgtacnnnnnnnncacttctatcaaataaagtttgtctttgatgttaaaagaa 530  Q
    ||| |||| ||||||| ||||||||||||||||||||||||| | |||||||        ||||||||||||||||||||||||||||||||||||||||    
T  15658791 ggatgcactgattaacatttccctttttattaaacttcagtactgtttgtacttttttt-cacttctatcaaataaagtttgtctttgatgttaaaagaa 15658693  T
Q  531 aaaattatcttcttggctttttctaaaatcaaattttattgatagctttgctctttgaaaaattggt--aattatcaatacatgtaagggggtgggaatc 628  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || ||| ||||||||||||||||||||    
T  15658692 aaagttatcttcttggctttttctaaaatcaaattttattgatagctttgctctttgaaaaattggtaaaatgataaatccatgtaagggggtgggaatc 15658593  T
Q  629 tttctcattaaaaatcatattcttgagcccaacgacaaaacatcatttaagctt 682  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  15658592 tttctcattaaaaatcatattcttgagcgcaacgacaaaacattatttaagctt 15658539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 331 - 454
Target Start/End: Original strand, 35470285 - 35470407
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| | |||||||    
T  35470285 tataattggcattgaaaaaa-caactttttaacttttaaaacatagaatacacaattttcaaggaaatatttcctttaataattccttaaccagtgcccc 35470383  T
Q  431 ggaggcaccgattaacgtttccct 454  Q
    |||||||||| ||||| |||||||    
T  35470384 ggaggcaccggttaacatttccct 35470407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 15659211 - 15659133
Alignment:
Q  12 gacaaaattaatcaaacaggtcttccacataatcttccaaattaatttgtcagttcaaattcattcacaatttaaaata 90  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15659211 gacaaaattaatcaaacaggtcttccacatactcttccaaattaatttgtcagttcaaattcattcacaatttaaaata 15659133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 8186380 - 8186308
Alignment:
Q  337 ttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaa 409  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  8186380 ttgcattgaaaagagcaactttttaacttttaaaacataaaatacacaatttccaagaaaatatttcctttaa 8186308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 491 - 563
Target Start/End: Complemental strand, 15649838 - 15649766
Alignment:
Q  491 cacttctatcaaataaagtttgtctttgatgttaaaagaaaaaattatcttcttggctttttctaaaatcaaa 563  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||    
T  15649838 cacttctatcaaataaagtttgtctttgatgttaaaagaaaaagttatattcttggcttttgctaaaaacaaa 15649766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 331 - 455
Target Start/End: Original strand, 29108749 - 29108873
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||  |||||||||||| |||  ||||||||||||| ||||||| |||| | ||| | |    
T  29108749 tataatttgtattgaaaagagcaattttttaacttttaaaaaatgaaatacacaattttcaagaaaatatttccttttataattccttaaccagtgtcgc 29108848  T
Q  431 ggaggcaccgattaacgtttccctt 455  Q
    ||  |||||||||||| ||||||||    
T  29108849 gggagcaccgattaacatttccctt 29108873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 562 - 681
Target Start/End: Complemental strand, 15649428 - 15649302
Alignment:
Q  562 aattttattgatagcttt-gctctttgaaaaattggtaattatcaatacatgtaa------gggggtgggaatctttctcattaaaaatcatattcttga 654  Q
    |||||||||||||| ||| ||||||||||||||||||||| | || | |||||||      || ||  ||||||||||  ||||||||||||||||||||    
T  15649428 aattttattgatagtttttgctctttgaaaaattggtaatgagcagtccatgtaactgtaaggtggaaggaatctttcaaattaaaaatcatattcttga 15649329  T
Q  655 gcccaacgacaaaacatcatttaagct 681  Q
    ||||||||||||||||| |||||||||    
T  15649328 gcccaacgacaaaacattatttaagct 15649302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 45326701 - 45326758
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaattt 388  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||    
T  45326701 tataatttgcatttaaaagtgcaactttttaacttttaaaagatagaatacacaattt 45326758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 25749756 - 25749683
Alignment:
Q  336 tttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaa 409  Q
    ||||||||||||||| ||  ||||||||||| |||| ||||||||||||||||||||  |||||||||| ||||    
T  25749756 tttgcattgaaaagaacacttttttaactttcaaaaaatagaatacacaatttccaagaaaatatttcccttaa 25749683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 331 - 415
Target Start/End: Original strand, 6970470 - 6970554
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattc 415  Q
    ||||||||| |||| |||  |||| |||| ||||||||||||||| |||||||||||||||| |||  ||||||||| |||||||    
T  6970470 tataatttgtattggaaaatgcaatttttgaacttttaaaacataaaatacacaatttccaaggaatcatttccttttataattc 6970554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 28580399 - 28580487
Alignment:
Q  332 ataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    |||||||| ||||||||||| || |||| ||||||||||| ||| ||||||||||||| |   |||||||| |||| ||||||| ||||    
T  28580399 ataatttgtattgaaaagagtaatttttcaacttttaaaaaataaaatacacaatttctataaaaatattttcttttataattctttaa 28580487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 456
Target Start/End: Original strand, 16711859 - 16711938
Alignment:
Q  377 aatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccggaggcaccgattaacgtttcccttt 456  Q
    |||||||||||||  |  ||| ||||||||| ||||||| |||||| |||| |||| ||||| ||||||| |||||||||    
T  16711859 aatacacaatttctgagaaaacatttccttttataattctttaatcagtgcgccgggggcactgattaacatttcccttt 16711938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 32143700 - 32143613
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatc 422  Q
    |||| ||||||||| | |||  ||| ||||||||||| |||||||||||||||| |||  |||||||| ||||  |||||| ||||||    
T  32143700 atttacattgaaaataacaatatttcaacttttaaaaaatagaatacacaattttcaagaaaatattttcttttctaattctttaatc 32143613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 15658952 - 15658918
Alignment:
Q  270 gggtcttgttaaccgatgcccccggggcactggtt 304  Q
    ||||||||||||||||||||||||| |||||||||    
T  15658952 gggtcttgttaaccgatgcccccggagcactggtt 15658918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 33635758 - 33635700
Alignment:
Q  356 tttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataatt 414  Q
    ||||||||||||||||  |||||||||||||||||||   ||||||| |||| ||||||    
T  33635758 tttttaacttttaaaaagtagaatacacaatttccaagacaatattttcttttataatt 33635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 331 - 456
Target Start/End: Complemental strand, 1051879 - 1051754
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||     
T  1051879 tataatttgcattgaaaagagcaattttttaacttttaaaacatagaatacacaattttcaaggaaatatttcctttaataattccttaatcagtgccct 1051780  T
Q  431 ggaggcaccgattaacgtttcccttt 456  Q
     |||| |||| ||||| |||||||||    
T  1051779 agaggtaccggttaacatttcccttt 1051754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 3168486 - 3168397
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||    
T  3168486 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttttaaagaaatatttcctttaataattccttaa 3168397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 331 - 411
Target Start/End: Original strand, 1646593 - 1646673
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaata 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  1646593 tataatttgcattgaaaagagcaactttttaacttttaaaacataaaatacacaattttcaaagaaatatttcctttaata 1646673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 33033220 - 33033303
Alignment:
Q  334 aatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcat 417  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||  |||||||| |||| |||||||||    
T  33033220 aatttgcattgaaaagagcaattttttagcttttaaaacttagaatacacaatttccaagaaaatattttcttttataattcat 33033303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 335 - 451
Target Start/End: Original strand, 49081279 - 49081395
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccggag 434  Q
    |||| |||||||||||||||  ||||||||||||||| |||||||||||||||| |||  |||||||||||||  |||||| |||||| ||||||  | |    
T  49081279 atttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaattttcaaaaaaatatttccttttctaattctttaatcagtgcccaaggg 49081378  T
Q  435 gcaccgattaacgtttc 451  Q
    |||||| ||||| ||||    
T  49081379 gcaccggttaacatttc 49081395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 331 - 451
Target Start/End: Original strand, 7633155 - 7633274
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    |||| |||||||||||||  |||| |||||||||||||||| |||||||||||||||| |||  ||  ||||||||| ||||||| |||| | || ||||    
T  7633155 tatattttgcattgaaaaatgcaattttttaacttttaaaatatagaatacacaattttcaaaaaatcatttccttttataattccttaaccagtccccc 7633254  T
Q  431 ggaggcaccgattaacgtttc 451  Q
    ||| |||||| ||||| ||||    
T  7633255 gga-gcaccggttaacatttc 7633274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 47742774 - 47742853
Alignment:
Q  341 attgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    |||||||||| ||  ||||||||||||||||  || ||||||||| ||||||   |||||||||||| ||||||| ||||    
T  47742774 attgaaaagaacacttttttaacttttaaaatgtataatacacaaattccaagataatatttccttttataattccttaa 47742853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 40123837 - 40123775
Alignment:
Q  331 tataatttgcattgaaaagagcaa-ctttttaacttttaaaacatagaatacacaatttccaa 392  Q
    |||||||||||||||||||| |||  |||||||||||| ||| ||| ||||||||||| ||||    
T  40123837 tataatttgcattgaaaagaacaatttttttaacttttcaaatataaaatacacaattaccaa 40123775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 36619910 - 36619983
Alignment:
Q  340 cattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataat 413  Q
    ||||||||||| ||   ||| |||||||||||  || |||||||||||||||||  |||||||||||| |||||    
T  36619910 cattgaaaagaacactatttaaacttttaaaaagtaaaatacacaatttccaatacaatatttccttttataat 36619983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 37858419 - 37858476
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaa 392  Q
    ||||||||||||||||  ||  ||| |||||||| || ||||||||||||||||||||    
T  37858419 atttgcattgaaaagaataatatttcaacttttataaaatagaatacacaatttccaa 37858476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 50498952 - 50498895
Alignment:
Q  345 aaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatattt 402  Q
    ||||||||||  |||||||||| |||| ||| ||||||||||||||||  ||||||||    
T  50498952 aaaagagcaatattttaactttaaaaaaataaaatacacaatttccaaaaaaatattt 50498895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 331 - 455
Target Start/End: Original strand, 9922923 - 9923046
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||| |||| | |||||      
T  9922923 tataatttgaattgaaaagagcaactttttaacttttaaaacatataatacacaattttcaaagaaatattttctttaataattccttaacctgtgccat 9923022  T
Q  431 ggaggcaccgattaacgtttccctt 455  Q
    || ||||||| ||||| ||||||||    
T  9923023 gg-ggcaccggttaacatttccctt 9923046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 35457424 - 35457339
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaat 421  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||     |||| |||  ||||||||||||||||||||| |||||    
T  35457424 tataatttgcattgaaaagaacaactttttaacttttcaaacatagaat-----attttcaagaaaatatttcctttaataattccttaat 35457339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 427
Target Start/End: Original strand, 33054089 - 33054185
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgc 427  Q
    ||||||||  ||||||||||  |||||||||| |||| ||| ||||||||||||||||  ||  ||||||||| ||||||||||  |||||| ||||    
T  33054089 tataatttaaattgaaaagaataactttttaatttttcaaatatagaatacacaattttaaagaaaatatttcttttaataatttcttaatcagtgc 33054185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 38084006 - 38083950
Alignment:
Q  337 ttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaat 393  Q
    ||||||||||||||||||  ||||||||||||||| ||| ||||||| |||| ||||    
T  38084006 ttgcattgaaaagagcaatgttttaacttttaaaatatacaatacaccattttcaat 38083950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 8590201 - 8590130
Alignment:
Q  336 tttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttccttt 407  Q
    ||||||||||||| | ||  ||||||||||||||||  || ||||||||||||||||  |||||||| ||||    
T  8590201 tttgcattgaaaataacacttttttaacttttaaaaggtaaaatacacaatttccaaaaaaatattttcttt 8590130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 932201 - 932135
Alignment:
Q  336 tttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatattt 402  Q
    ||||||||||||||| ||  ||||||||||| ||||  || |||||||||||||||||  |||||||    
T  932201 tttgcattgaaaagaacatttttttaactttaaaaaagtaaaatacacaatttccaatacaatattt 932135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 26296450 - 26296496
Alignment:
Q  374 tagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    ||||||||||||||||||||  |||||||||||| ||||||| ||||    
T  26296450 tagaatacacaatttccaatacaatatttccttttataattctttaa 26296496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 6395556 - 6395467
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||  |||||||| |||||||||||| ||||    
T  6395556 tataatttgcattgaaaagaacaactttttaacttttaaaacataaaatacacaattttcaaaaaaatattttctttaataattccttaa 6395467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 19998561 - 19998650
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    |||||| ||||||||||||  ||| |||||||||||||||| |||||||||||||||| ||| ||| ||||| |||| || |||| ||||    
T  19998561 tataatatgcattgaaaagtacaattttttaacttttaaaatatagaatacacaattttcaaagaattattttcttttatgattccttaa 19998650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 420
Target Start/End: Complemental strand, 964036 - 963956
Alignment:
Q  340 cattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    ||||||||||| ||  ||||||||||| ||||  |||||||||||||||||||   |||||||||| | ||||||| ||||    
T  964036 cattgaaaagaacacttttttaactttgaaaaagtagaatacacaatttccaagacaatatttcctattataattccttaa 963956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 48282859 - 48282893
Alignment:
Q  270 gggtcttgttaaccgatgcccccggggcactggtt 304  Q
    ||||||||||||||| |||||||||||||||||||    
T  48282859 gggtcttgttaaccggtgcccccggggcactggtt 48282893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 331 - 453
Target Start/End: Original strand, 7662280 - 7662402
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    |||||||||||||||||| | ||| ||| |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||  |||| | || || |    
T  7662280 tataatttgcattgaaaaaaacaattttctaacttttaaaatatagaatacacaatttccaaaaaaatatttcctttaataatttcttaaccagtacctc 7662379  T
Q  431 ggaggcaccgattaacgtttccc 453  Q
     ||||||||| ||||| ||||||    
T  7662380 agaggcaccggttaacatttccc 7662402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 335 - 453
Target Start/End: Original strand, 8457527 - 8457645
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccggag 434  Q
    |||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||  |||||||||||||  |||||| |||||| ||| ||||| |    
T  8457527 atttacattgaaaagagcaacatttcaacttttaaaaaatagaatacacaatttccaagaaaatatttccttttctaattccttaatcagtggcccgggg 8457626  T
Q  435 gcaccgattaacgtttccc 453  Q
    |||| | ||||| ||||||    
T  8457627 gcactggttaacatttccc 8457645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 34127747 - 34127641
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaa-atatttcctttaataattcattaatccgtgccccgga 433  Q
    |||| |||||||||||||||  ||||||||||||||| ||||||||||||||||||||  || |||||||||||  |||||| |||| | |||||||||     
T  34127747 atttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaatttccaagaaatatatttccttttctaattccttaaccagtgccccggg 34127648  T
Q  434 ggcaccg 440  Q
    |||||||    
T  34127647 ggcaccg 34127641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 331 - 446
Target Start/End: Complemental strand, 4613483 - 4613369
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    ||||||||||||| |||||| ||| |||||||||||||||||  |||||||| ||||| |||  |||||||| |||| ||||||| |||||| |||  ||    
T  4613483 tataatttgcattaaaaagatcaattttttaacttttaaaactcagaatacataattt-caaaaaaatattttcttttataattccttaatcggtggtcc 4613385  T
Q  431 ggaggcaccgattaac 446  Q
    ||| ||| ||||||||    
T  4613384 ggaagcatcgattaac 4613369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 457
Target Start/End: Complemental strand, 42563274 - 42563157
Alignment:
Q  340 cattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccggaggcacc 439  Q
    ||||||||||| ||| || |||||||| |||| ||||||| || ||||| ||||  |||||||||||| ||||||| ||||   |||| |||||||||      
T  42563274 cattgaaaagaacaatttattaactttcaaaaaatagaatgcagaattttcaatacaatatttccttttataattccttaactagtgctccggaggcatt 42563175  T
Q  440 gattaacgtttccctttt 457  Q
    | ||||||||||||||||    
T  42563174 ggttaacgtttccctttt 42563157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 356 - 455
Target Start/End: Complemental strand, 44362356 - 44362257
Alignment:
Q  356 tttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccggaggcaccgattaacgtttccctt 455  Q
    ||||||||||| |||| |||||||||||||||| ||||  |||||||| ||| ||||||| |||| |  |||||||||| ||  | ||||| ||||||||    
T  44362356 tttttaactttcaaaaaatagaatacacaattttcaatacaatatttctttttataattccttaaccactgccccggagacattggttaacatttccctt 44362257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 456
Target Start/End: Complemental strand, 16938979 - 16938864
Alignment:
Q  341 attgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccggaggcaccg 440  Q
    |||||||| ||||  ||||||||||| ||||  ||||||||||||||| |||   | |||||||| | ||||||| ||||||  | |||| || ||||||    
T  16938979 attgaaaacagcacttttttaactttaaaaaagtagaatacacaattttcaagacactatttcctcttataattccttaatcaataccccagaagcaccg 16938880  T
Q  441 attaacgtttcccttt 456  Q
     ||||| |||||||||    
T  16938879 gttaacatttcccttt 16938864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 41646518 - 41646466
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaattt 388  Q
    |||||||||||||| || ||  ||||||||||||||| ||||||||||||||||    
T  41646518 atttgcattgaaaa-agtaatattttaacttttaaaaaatagaatacacaattt 41646466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 331 - 455
Target Start/End: Complemental strand, 8052299 - 8052175
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtg-ccc 429  Q
    ||||||||  ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||  ||||||||| ||||||  |||||| ||| |||    
T  8052299 tataatttttattgaaaagtgcaactttt-aacttttaaaacatagaatacacaatttccaaggaataatttccttttataatttcttaatcagtgaccc 8052201  T
Q  430 cggaggcaccgattaacgtttccctt 455  Q
    ||| | ||||| ||||| ||||||||    
T  8052200 cggggacaccggttaacatttccctt 8052175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 29608537 - 29608465
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttccttt 407  Q
    |||| ||||||||||| |||  ||||||||||||||| |||||||||| |||||||||  | |||||||||||    
T  29608537 atttacattgaaaagaacaatattttaacttttaaaaaatagaatacataatttccaaaaatatatttccttt 29608465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 2667133 - 2667077
Alignment:
Q  374 tagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    ||||||||||||||||||||  ||||||| |||| ||||||| |||| |||||||||    
T  2667133 tagaatacacaatttccaatacaatattttcttttataattccttaacccgtgcccc 2667077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 454
Target Start/End: Original strand, 19742110 - 19742228
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccggag 434  Q
    |||| |||||||||||||||  ||| ||  ||||||| ||||||||| ||||||| ||  ||||||||| |||  ||| |  |||||| ||| |||||||    
T  19742110 atttacattgaaaagagcaatatttcaaactttaaaagatagaatactcaatttctaagaaaatatttcattttctaactgcttaatcagtg-cccggag 19742208  T
Q  435 gcaccgattaacgtttccct 454  Q
    |||||| ||||| |||||||    
T  19742209 gcaccggttaacatttccct 19742228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 14750426 - 14750337
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    ||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||| |||  ||||||| | ||||||| ||||    
T  14750426 tataatttgtattgaaaagtgcaaatttttaacttttaaaatatagaatacacaatttccaaggaatcatttcctcttataattccttaa 14750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 55142316 - 55142405
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    ||||| |||||||||||||| | ||||||||| ||| |||||||||||||||||||||||||  |||||||| |||| ||||||| ||||    
T  55142316 tataacttgcattgaaaagatcgactttttaaatttcaaaacatagaatacacaatttccaaaaaaatattttcttttataattctttaa 55142405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 34664349 - 34664271
Alignment:
Q  336 tttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataatt 414  Q
    ||||||||||||||||  | |||| ||||||||||| |||||||||| |||||||||| ||||||||||| | ||||||    
T  34664349 tttgcattgaaaagagtcatttttcaacttttaaaaaatagaatacataatttccaataaaatatttcctattataatt 34664271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 4275562 - 4275515
Alignment:
Q  341 attgaaaagagcaactttttaacttttaaaacatagaatacacaattt 388  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  4275562 attgaaaagtgcaattttttaacttttaaaacatagaatacacaattt 4275515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 30429402 - 30429453
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaataca 382  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  30429402 tataatttgcattgaaaaaagcaatattttaacttttaaaacatagaataca 30429453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 40892880 - 40892801
Alignment:
Q  336 tttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattc 415  Q
    ||||||||||||||| ||  || |||||||| ||||  |||||||||||||||||||  ||||||||||||| |||||||    
T  40892880 tttgcattgaaaagaacactttattaactttcaaaaagtagaatacacaatttccaagaaaatatttccttttataattc 40892801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 37677441 - 37677368
Alignment:
Q  334 aatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttccttt 407  Q
    ||||| |||||| ||||||||  ||| ||||||||||| |||||||||||||||| |||  |||||||||||||    
T  37677441 aatttacattgacaagagcaatatttcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttt 37677368  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 422
Target Start/End: Original strand, 9099173 - 9099239
Alignment:
Q  356 tttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatc 422  Q
    ||||||||||| ||||  | |||||||| |||||||||  |||||||||||| ||||||| ||||||    
T  9099173 tttttaactttcaaaaagttgaatacacgatttccaatacaatatttccttttataattccttaatc 9099239  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 36545128 - 36545162
Alignment:
Q  270 gggtcttgttaaccgatgcccccggggcactggtt 304  Q
    ||||||||||||||| |||||||||||||||||||    
T  36545128 gggtcttgttaaccggtgcccccggggcactggtt 36545162  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 36563186 - 36563152
Alignment:
Q  270 gggtcttgttaaccgatgcccccggggcactggtt 304  Q
    ||||||||||||||| |||||||||||||||||||    
T  36563186 gggtcttgttaaccggtgcccccggggcactggtt 36563152  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 39149220 - 39149166
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttc 389  Q
    |||||||||||||| | |||  ||| ||||||||||| |||||||||||||||||    
T  39149220 atttgcattgaaaataacaatatttcaacttttaaaaaatagaatacacaatttc 39149166  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 32600737 - 32600684
Alignment:
Q  335 atttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaattt 388  Q
    ||||| ||||||||||||||   || ||||||||||| ||||||||||||||||    
T  32600737 atttgtattgaaaagagcaataattcaacttttaaaatatagaatacacaattt 32600684  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 331 - 456
Target Start/End: Original strand, 25790097 - 25790221
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgcccc 430  Q
    ||||||||| |||||||||||||| |||| |||||| ||||  |||| || |||||||| ||  |||||||| |||| ||||||  |||||| ||| | |    
T  25790097 tataatttgtattgaaaagagcaatttttcaactttaaaaaattagagtatacaatttctaagaaaatattttcttttataatttcttaatcagtgtctc 25790196  T
Q  431 ggaggcaccgattaacgtttcccttt 456  Q
    || ||||||| ||||| |||||||||    
T  25790197 gg-ggcaccggttaacatttcccttt 25790221  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 30198380 - 30198321
Alignment:
Q  361 aacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||||||  |||||| ||||    
T  30198380 aacttttaaaaaatagaatacacaatttctaagaaaatatttccttttctaattccttaa 30198321  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 8919476 - 8919386
Alignment:
Q  331 tataatttgcattgaaaagagcaacttttt-aacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaa 420  Q
    |||| |||||||||||||  |||| ||||| ||||||||||| |||||||| ||||||| |||  ||  ||||||||| ||||||| ||||    
T  8919476 tatattttgcattgaaaaatgcaatttttttaacttttaaaatatagaatatacaattttcaaaaaatcatttccttttataattccttaa 8919386  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 37720503 - 37720537
Alignment:
Q  270 gggtcttgttaaccgatgcccccggggcactggtt 304  Q
    ||||||||||||||||||||||| |||||||||||    
T  37720503 gggtcttgttaaccgatgcccccagggcactggtt 37720537  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 458
Target Start/End: Complemental strand, 45879179 - 45879077
Alignment:
Q  356 tttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccggaggcaccgattaacgtttccctt 455  Q
    |||||| |||| ||||  |||||||||||||||||||   || ||||||||| ||||||| |||| | ||||||| | |||||   ||||| ||||||||    
T  45879179 tttttacctttcaaaaagtagaatacacaatttccaagacaaaatttccttttataattccttaacctgtgcccccggggcactagttaacatttccctt 45879080  T
Q  456 ttt 458  Q
    |||    
T  45879079 ttt 45879077  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 6221091 - 6221168
Alignment:
Q  354 actttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattcattaatccgtgccccg 431  Q
    ||||||||||||| ||||  ||||||| |||||||||||   ||||| |||||| ||||||| |||| | ||||||||    
T  6221091 actttttaactttcaaaaagtagaatatacaatttccaagacaatatctccttttataattccttaaccagtgccccg 6221168  T

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Target: scaffold0603 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 7149 - 7098
Alignment:
Q  356 tttttaacttttaaaacatagaatacacaatttccaatgaaatatttccttt 407  Q
    |||||||||||||||| |||||||||||||||| |||  || ||||||||||    
T  7149 tttttaacttttaaaatatagaatacacaattttcaagaaattatttccttt 7098  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 351202 - 351153
Alignment:
Q  331 tataatttgcattgaaaagagcaactttttaacttttaaaacatagaata 380  Q
    |||||| | |||||||||| |||| |||||||||||||||| ||||||||    
T  351202 tataatatacattgaaaagtgcaattttttaacttttaaaatatagaata 351153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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