View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_10 (Length: 264)
Name: NF21047_low_10
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 15659438 - 15659286
Alignment:
| Q |
15 |
atgaataatactaaacgacaaaaacataattatttaattgtcgtactatattgaataacattctttctttagacgtaatcaaaagaaaagaaagagaatc |
114 |
Q |
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| T |
15659438 |
atgaataatactaaacgacaaaaacatcattatttaattgtcgtactatattgaataacattctttctttagacgtaatcaaaagaaaagaaagagaatc |
15659339 |
T |
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| Q |
115 |
ctt---nnnnnnnnnntattatgcaggaagacatgttaatgggacatccacta |
164 |
Q |
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| T |
15659338 |
cttaaaaaaaaaaaaatattatgcaggaagacatgttaatgggacatccacta |
15659286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 15650381 - 15650218
Alignment:
| Q |
32 |
acaaaaacataattatttaattgtcgtactatattgaataacattctttctttagacgtaatcaaaagaaaagaaagagaatcctt-------nnnnnnn |
124 |
Q |
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| T |
15650381 |
acaaaaacataattatttaatagtcgtactatattgactagcattctttctttagacgtaatcaaaagaaaagaaagagaatccttaaaaaaaaatacaa |
15650282 |
T |
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| Q |
125 |
nnntattatgcaggaagacatgttaatgggacatccactaataaggaatcataggtggtccttg |
188 |
Q |
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| T |
15650281 |
taatattatgcagggagacaagttaatgggacatccactaataaggaatcataggtggtccttg |
15650218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 15659285 - 15659243
Alignment:
| Q |
198 |
gtatgcaagagattttaataatcaaacactttattattccttc |
240 |
Q |
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| T |
15659285 |
gtatgcaagagattttaataatcaaacactttattattccttc |
15659243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 15506719 - 15506675
Alignment:
| Q |
153 |
ggacatccactaataaggaatcataggtggtccttggaataattt |
197 |
Q |
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| T |
15506719 |
ggacatccactaataaggaatcatatgtggtccttggaataattt |
15506675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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