View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21047_low_14 (Length: 205)
Name: NF21047_low_14
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 46226892 - 46227063
Alignment:
| Q |
18 |
aaaattgtaggcaagaaattattagagggaagaatgcatgtgttttctttgagtagaatgnnnnnnnnncgttggttcaacttagaccttttaactaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46226892 |
aaaattgtaggcaagaaattattagagggaagaatgcatgtgttttctttgagtagaatgtttttttttcgttggttcaacttagaccttttaactaaaa |
46226991 |
T |
|
| Q |
118 |
catggtcttacacttcattggtacttgtaaatgtgattttaatctatctttctttttatctcttcttctata |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46226992 |
catggtcttacacttcattggtacttgtaaatgtgattttaatctatctttctttttatctcttcttctata |
46227063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University