View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_2 (Length: 503)
Name: NF21047_low_2
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 486
Target Start/End: Original strand, 24693559 - 24694039
Alignment:
| Q |
11 |
cagagatcaggcgcaaaagtgtttattttcacaacgagcaaaggagtttatttttgctactctagatgatgaaggagaacattgtggtatttgtatggaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24693559 |
cagagatcaggcgcaaaagtgtttattttcacaacgagcaaaggagtttatttttgctactctagatgatgaaggagaacattgtggtatttgtatggaa |
24693658 |
T |
|
| Q |
111 |
ggttgttcttacttatgtgatcccaatgattctattaaggggtcaagttaccccatgaatcaacaaagcactaaaatccaacctagagatgaacaaatta |
210 |
Q |
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| T |
24693659 |
gattgttcttacttatgtgaccccaatgattctattaaggggtcaagttaccccatgaatcaacaaagcactaaaatccaacctagagatgaacaaatta |
24693758 |
T |
|
| Q |
211 |
ttttacaagtagcagaagagcaaatttttcctgccatatacgacaaaggagaatattgtgaaacctgtacagaagactattctcacctgagtgaatctga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24693759 |
ttttacaagtagcagaagagcaaatttttcctgccatatacgacaaaggagaatattgtgaaacctgtacagaagactattctcacctgagtgaatctga |
24693858 |
T |
|
| Q |
311 |
atattctattaaggtgttgagttaccctatgcatcaagggagcttggaaatccaacctagagatttaatggt-----atagtttctccttcagtaccaaa |
405 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24693859 |
agattctattaaggttttgagttaccctatgcatcaagggagcttggaaaaccaacctagagatttaatggttggtaatagtttctccttcagtaccaaa |
24693958 |
T |
|
| Q |
406 |
ccatcattaaatgataaaccaaaaatagactttgtgaaagcattgaagtcaatgggtgatatttattttactgatggtaag |
486 |
Q |
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| T |
24693959 |
ccatcattaaatgataaaccaaatatatactttgtgaaagcattgaagtcaatgggtgataaatattttactgatggtaag |
24694039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 256 - 466
Target Start/End: Complemental strand, 24479289 - 24479074
Alignment:
| Q |
256 |
aaggagaatattgtgaaacctgtacagaagactattctcacctgagtgaatctgaatattctattaaggtgttgagttaccctatgcatcaagggagctt |
355 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||| | | ||||||||||||| |
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| T |
24479289 |
aaggagaatattgtgctacttgtacagaagactattctcacctgagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagctt |
24479190 |
T |
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| Q |
356 |
ggaaatccaacctagagatttaatggt-----atagtttctccttcagtaccaaaccatcattaaatgataaaccaaaaatagactttgtgaaagcattg |
450 |
Q |
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| ||||||||| ||||||| ||| || ||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
24479189 |
gaaaatccaacatagagataaaatagttagtgatagtttctccttaccaaccaaatcatcattaaaagataaaccaaaaatagactttgtaaaagcattg |
24479090 |
T |
|
| Q |
451 |
aagtcaatgggtgata |
466 |
Q |
| |
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|||||| ||| ||||| |
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| T |
24479089 |
aagtcagtggatgata |
24479074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 24479340 - 24479266
Alignment:
| Q |
31 |
gtttattttcacaacgagcaaaggagtttatttttgctactctagatgatgaaggagaacattgtggtatttgta |
105 |
Q |
| |
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|||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |||||| || ||||| |
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| T |
24479340 |
gtttattttcacaagaagcaaatgagattatttttcctactctagatgatgaaggagaatattgtgctacttgta |
24479266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 24455844 - 24455769
Alignment:
| Q |
306 |
tctgaatattctattaaggtgttgagttaccctatgcatcaagggagcttggaaatccaacctagagatttaatgg |
381 |
Q |
| |
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|||||| |||||||||||| | ||||||||||| |||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
24455844 |
tctgaagattctattaaggggccaagttaccctataaatcaagggagcttgaaaatccaaccgagagatttaatgg |
24455769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 382
Target Start/End: Complemental strand, 24413947 - 24413843
Alignment:
| Q |
278 |
tacagaagactattctcacctgagtgaatctgaatattctattaaggtgttgagttaccctatgcatcaagggagcttggaaatccaacctagagattta |
377 |
Q |
| |
|
|||| |||||||||||||||| ||||| | ||| |||||||||||| || ||||||| | || |||||| ||||| | ||||| ||||||||||| |
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| T |
24413947 |
tacacaagactattctcacctaagtgactttgatgattctattaaggggtctagttaccttgtgaatcaagaaagctttaatatccatgctagagattta |
24413848 |
T |
|
| Q |
378 |
atggt |
382 |
Q |
| |
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||||| |
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| T |
24413847 |
atggt |
24413843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 12 - 466
Target Start/End: Complemental strand, 41370043 - 41369584
Alignment:
| Q |
12 |
agagatcaggcgcaaaagtgtttattttcacaacgagcaaaggagtttatttttgctactctagatgatgaaggagaacattgtggtatttgtatggaag |
111 |
Q |
| |
|
||||||||||| |||| | ||||||||| |||| || |||||||||||||| || ||||||||||| | |||| |||| | ||||||||||||||||||| |
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| T |
41370043 |
agagatcaggcacaaaggagtttatttttacaaggaacaaaggagtttattcttcctactctagataacgaagtagaatactgtggtatttgtatggaag |
41369944 |
T |
|
| Q |
112 |
gttgttcttacttatgtgatcccaatgattctattaaggggtcaagttaccccatgaatcaacaaagcactaaaatccaacctagagatgaacaaattat |
211 |
Q |
| |
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||||||||| | || | |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| || ||| ||| |
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| T |
41369943 |
actgttcttacctcagttaccccaatgattctgttaaggggtcaagttaccccatgaatcaaaggagcatgaaaatccaagctagagataaaaaaaatat |
41369844 |
T |
|
| Q |
212 |
tttacaagtagcagaagagcaaatttttcctgccatatacgacaaaggagaatattgtgaaacctgtacagaagactattctcacctgagtgaatctgaa |
311 |
Q |
| |
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|| ||||| ||||||||| |||||||||||||| || | |||||| ||||||||| | ||||||| |||||||||||||||||||| ||||| ||| |
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| T |
41369843 |
ttcacaagcagcagaagaacaaatttttcctgctctaaataacaaagaagaatattgcgctacctgtatggaagactattctcacctgagcgaatcggaa |
41369744 |
T |
|
| Q |
312 |
tattctattaaggtgttgagttaccctatgcatcaagggagcttggaaatccaacctagagatttaatggt-----atagtttctccttcagtaccaaac |
406 |
Q |
| |
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|||||||||||||| ||||||||| || |||||||||||||| |||| |||| ||||||||||||||| |||||||||||| | |||| || |
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| T |
41369743 |
gattctattaaggtgccaagttaccctttgtatcaagggagcttgaaaattcaacatagagatttaatggttagtgatagtttctcctcaggcaccatac |
41369644 |
T |
|
| Q |
407 |
catcattaaatgataaaccaaaaatagactttgtgaaagcattgaagtcaatgggtgata |
466 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| ||||||| || | ||||| ||||| |
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|
| T |
41369643 |
catcattaaatgataaacaaaaaattgactttgtggaagcattaaacttaatggatgata |
41369584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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