View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_3 (Length: 489)
Name: NF21047_low_3
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 44473685 - 44474036
Alignment:
| Q |
17 |
aatttgaagtaatggtaagtcatttatcttttttctttctttccataatattgagttagattattttactaacttataacttttcttttataggtgaata |
116 |
Q |
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| T |
44473685 |
aatttgaagtaatgttaagt-atttatcttttttctttctttccataatattgagttaaattattttactaacttataacttttcttttataggtcaata |
44473783 |
T |
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| Q |
117 |
g----------------cttatcacttatcaaatttttctattaattttgcccttgtcatctcaattgnnnnnnnnnttattaaacataattttttatgt |
200 |
Q |
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| T |
44473784 |
ggtcaatattcaagtagcttaccacttatcaaatttttcttttaattttgcccttgtcatctcaattgaaaaaa-----aaaaaacataattttttatgt |
44473878 |
T |
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| Q |
201 |
catttcataaattatctgataacaaatttcaaatatcttatataaattcatttgttttaactcaaacttatcaactatccaccattttcatcaaacatag |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||| |
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| T |
44473879 |
catttcataaattatcagataacaaatttcaaatatcttctataaattcattcgttttaactcaaatttatcaattattcaccattttcatcaaacatag |
44473978 |
T |
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| Q |
301 |
ccttaggggtcaacatgctcgaatataattacttttagcaaaggaatctatgatcttt |
358 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44473979 |
ccttaggggtcaacatgctcgaatataattactttcagcaaaggaatctatgatcttt |
44474036 |
T |
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