View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_4 (Length: 455)
Name: NF21047_low_4
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 34 - 436
Target Start/End: Original strand, 48441730 - 48442134
Alignment:
| Q |
34 |
agcttatatgtctaattcatcaagagacaattctttcaattcaagaagtcgatcactaccaccatcatcaaacaaatcatgcacatccccaccaatatcc |
133 |
Q |
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| T |
48441730 |
agcttatatgtctaattcatcaagagacaattctttcaattcaagaagtcgatcactaccaccatcatcaaacaaatcatgcacatccccaccaatatcc |
48441829 |
T |
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| Q |
134 |
tatgatcatgcatgtctcnnnnnnnatatcctcaaagaatgaacaaaaggagtgtgtactccaattcggctaataacatgacaaagaacaaggctccaca |
233 |
Q |
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| T |
48441830 |
tatgatcatgcatgtctctttttttatatcctcaaagaatgaacaaaaggagtatgtactccaattcggctaataacatgacaaagaacaaggctccaca |
48441929 |
T |
|
| Q |
234 |
aaattttaaaaacatccttgaaggagcaactcatattttggtacttaaagtggttctcatgtgtatacaacactaacatccacgttttcaattcagtgcc |
333 |
Q |
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| T |
48441930 |
aaattttaaaaacatccttgaaggagcaactcatattttggtacttaaagtggttctcatgtgtatacaacactaacatccacgttttcaattcagtgcc |
48442029 |
T |
|
| Q |
334 |
taatatgtttgcactttatcccttcaagctagcacctc--nnnnnnnnttaggaaataggtcttacgaataacattgcattctaaaagggagagtaccta |
431 |
Q |
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| T |
48442030 |
taatatgtttgcactttatcccttcaagctagcacctcaaaaaaaaaattacgaaataggtcttacgaataacattgcattctaaaagggagagtaccta |
48442129 |
T |
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| Q |
432 |
tatag |
436 |
Q |
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| T |
48442130 |
tatag |
48442134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 2403300 - 2403369
Alignment:
| Q |
15 |
tcatcatccggaaaagcatagcttatatgtctaattcatcaagagacaattctttcaattcaagaagtcg |
84 |
Q |
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||||||||| ||||| ||||||| ||||||||||||| ||| |||||| |||| ||||||||||||||| |
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| T |
2403300 |
tcatcatccaaaaaagtatagcttctatgtctaattcaccaacagacaactcttccaattcaagaagtcg |
2403369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 34126651 - 34126703
Alignment:
| Q |
49 |
ttcatcaagagacaattctttcaattcaagaagtcgatcactaccaccatcat |
101 |
Q |
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|||| |||||||||| ||||||||||||||||||| |||| |||| |||||| |
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| T |
34126651 |
ttcaccaagagacaaatctttcaattcaagaagtctctcaccaccatcatcat |
34126703 |
T |
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