View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_5 (Length: 350)
Name: NF21047_low_5
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_5 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 53 - 350
Target Start/End: Original strand, 2446995 - 2447292
Alignment:
| Q |
53 |
tttaagtaaaattgccacttattaagactacttctacgatgcaaacatgtgtgacattttaattctataaatttgataaaagtttattcaagacttccct |
152 |
Q |
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| T |
2446995 |
tttaagtaaaattgccacttatcaagactaattctacgatgcaaacatgtgtgacattttaattatataaatttgataaaagtttattcaagacttccct |
2447094 |
T |
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| Q |
153 |
tcacatatgtagagataccataaaataacaatagtatttgggtttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtg |
252 |
Q |
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| T |
2447095 |
tcacatatgtagagacgccataaaataacaatagtatttgggtttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtg |
2447194 |
T |
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| Q |
253 |
cctcnnnnnnnctttgcttcctaggtgagctttcaattttattactactttgtttttcacttctctttaatatatgtatatgatacacaagtattaac |
350 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447195 |
cctctttttttctttgcttcctaggtgagctttcaattttattactactttgtttttcacttctctttaatatatgtatatgatacacaagtattaac |
2447292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 2583641 - 2583764
Alignment:
| Q |
195 |
tttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaattttat |
294 |
Q |
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| T |
2583641 |
tttgactttatcaactttgtgatgcagaatgttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtgagttttcagttttgt |
2583740 |
T |
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| Q |
295 |
tactactttgtttttcacttctct |
318 |
Q |
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| T |
2583741 |
tactattttggtttttacttctct |
2583764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 2679501 - 2679438
Alignment:
| Q |
193 |
ggtttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctc |
256 |
Q |
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| T |
2679501 |
ggtttgactttattaactttgtgatgcagaatgctcttgttttgttatatttggcatgtgcctc |
2679438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 2602677 - 2602546
Alignment:
| Q |
193 |
ggtttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaatttt |
292 |
Q |
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| T |
2602677 |
ggtttgactttattaactttttgatgcacaatgctgttctttttttatatctggcttgtgcctctttcgttgcttgcttcctaggtgagttttcagtttt |
2602578 |
T |
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| Q |
293 |
attact-actttgtttttcacttctctttaat |
323 |
Q |
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| T |
2602577 |
gttactgtttttggttttcacttctctttaat |
2602546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 2616813 - 2616874
Alignment:
| Q |
195 |
tttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctc |
256 |
Q |
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||||||||| | |||||| ||||||||||||||||| || ||||||||||||| |||||||| |
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| T |
2616813 |
tttgactttgttaactttgtgatgcagaatgctgttgttttgttatatttggcatgtgcctc |
2616874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 2646850 - 2646754
Alignment:
| Q |
196 |
ttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaatttt |
292 |
Q |
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| T |
2646850 |
ttgactttgtcaactttgtgatgcagaatgctattgttttgttatatttggcatgtgcttcttttgttgcttgcttcctaggtgagttttcaatttt |
2646754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 2431147 - 2431200
Alignment:
| Q |
267 |
tgcttcctaggtgagctttcaattttattactactttgtttttcacttctcttt |
320 |
Q |
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| T |
2431147 |
tgcttcctaggtgagttttcaattctattattattttggttttcacttctcttt |
2431200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 2574670 - 2574564
Alignment:
| Q |
193 |
ggtttgactttatcaa-ctttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaattt |
291 |
Q |
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||||||||||||| || |||| ||||||||||||||||| || | ||||||||||| |||||||| |||||||||||||||| ||||| ||| |
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| T |
2574670 |
ggtttgactttattaaactttttgatgcagaatgctgttctttttttatatttggcatgtgcctcttttgttgcttgcttcctaggtgagttttcagttt |
2574571 |
T |
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| Q |
292 |
tattact |
298 |
Q |
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| T |
2574570 |
tgttact |
2574564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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