View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_6 (Length: 306)
Name: NF21047_low_6
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 48 - 294
Target Start/End: Original strand, 5217261 - 5217506
Alignment:
| Q |
48 |
aagcggtggacaccaaagacgtttttcattagaaatgtcagtgttatgacataatatattatgggtttttctatcatnnnnnnnnnnnnnngttgctaaa |
147 |
Q |
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| T |
5217261 |
aagcgttggacaccaaagacgtttttcaacagaaatgttagtgttatgacgtaatatattatgggtttttctatcataaaaaaaaaaaaa-gttgctaaa |
5217359 |
T |
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| Q |
148 |
gaagttagtaaccataagttactagtaaccaaagcattttgacttttcttatgaaaaagagtaacatttatttaattataatgagaattgtattgaatgt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
5217360 |
gaagttagtaaccataagttactagtaaccaaagcattttgacttttcttatgaaaaagagtaacatttatttaattataatgagaatggtcttgaatgt |
5217459 |
T |
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| Q |
248 |
tgccgacaatatatacaggttgatagtgcaaacaagtatgggatatt |
294 |
Q |
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| T |
5217460 |
tgccgacaatatatacaggttgatagtgcaaacaagtatgggatatt |
5217506 |
T |
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