View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_7 (Length: 296)
Name: NF21047_low_7
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 2447591 - 2447327
Alignment:
| Q |
20 |
agtatcgtgttggtgtatgaccgatcatgtcagacactgacacatgtcttcgatctgtagtgtcggtgctacatagcataaagtagaatgatatttttta |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447591 |
agtatcgtgttggtgtatgaccgatcatgtcaaacactgacatatgtcttcgatctgtagtgtcggtgctacatagcataaagtagaatgatatttttta |
2447492 |
T |
|
| Q |
120 |
agaacttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctac |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447491 |
agaccttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctac |
2447392 |
T |
|
| Q |
220 |
ttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2447391 |
ttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctctcacctgttc |
2447327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 128 - 284
Target Start/End: Complemental strand, 2431407 - 2431251
Alignment:
| Q |
128 |
tcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttcttgtc |
227 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| ||| |||||||||| |||| | |||||||| | |||||||||||||||| ||||||||||| |
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| T |
2431407 |
tcactaagaacatcttgaattactaggctgtcactagatacactggtgatgacatctgttgtgcttgtaacatgcaaatcaaagtatgatacttcttgtc |
2431308 |
T |
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| Q |
228 |
ttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431307 |
ttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
2431251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 284
Target Start/End: Complemental strand, 2584137 - 2583977
Alignment:
| Q |
124 |
cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct |
223 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||| |||||||| | ||||||||||||||| |||||||| | |||||||||||||||||||||||| |
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| T |
2584137 |
cttttcactaagaacatcttgaattactaggatgtcgttagagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttct |
2584038 |
T |
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| Q |
224 |
tgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
284 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2584037 |
tgtcttagaactgcttttaagtacctagctctcattcttgcagcttgtctttcacctgttc |
2583977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 284
Target Start/End: Complemental strand, 2617922 - 2617762
Alignment:
| Q |
124 |
cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct |
223 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||| | |||||| | ||||||||||||||| |||||||| | |||||||||||||||||||||||| |
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| T |
2617922 |
cttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttct |
2617823 |
T |
|
| Q |
224 |
tgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2617822 |
tgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
2617762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 2678895 - 2679055
Alignment:
| Q |
124 |
cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct |
223 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||| |||||||| | ||||||||||||||| |||||||| | |||||||||||||||||||||||| |
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| T |
2678895 |
cttttcactaagaacatcttgaatcactaggctgtcgttagagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttct |
2678994 |
T |
|
| Q |
224 |
tgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
284 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
2678995 |
tgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttcacctgttc |
2679055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 2646494 - 2646654
Alignment:
| Q |
124 |
cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct |
223 |
Q |
| |
|
|||||||||||| || |||||||||| || ||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
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| T |
2646494 |
cttttcactaagaacgtcttgaattaccagactgtcgttagagacactggtgatgacttctgatgtgcttgtaatatgcaaatcaaagtatgatacttct |
2646593 |
T |
|
| Q |
224 |
tgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2646594 |
tgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
2646654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 2601716 - 2601876
Alignment:
| Q |
124 |
cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct |
223 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||| ||| | |||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
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| T |
2601716 |
cttttcgctaataacatcttgaattaccaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttct |
2601815 |
T |
|
| Q |
224 |
tgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
284 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2601816 |
tgtcttaaaactgcttttaagtacctaactctcattcttgcagcttgtctttcatctgttc |
2601876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 2574314 - 2574474
Alignment:
| Q |
124 |
cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct |
223 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||| ||| | |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||| |
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| T |
2574314 |
cttttcgctaataacatcttgaattacgaggctatcattggagacactggtgatgacttctgatgtgcttgtaatatgcaaatcaaagtaagctacatct |
2574413 |
T |
|
| Q |
224 |
tgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
284 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574414 |
tgtcttagaattgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttc |
2574474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 274
Target Start/End: Original strand, 17874982 - 17875128
Alignment:
| Q |
128 |
tcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttcttgtc |
227 |
Q |
| |
|
|||||||| ||||||||||||| | ||||| |||||||| | ||||||| |||||| |||||||| | ||||||||||| || || |||||||| | |
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| T |
17874982 |
tcactaagaacatcttgaattacaatagtgtcattagagacactagtgatgatttctgaggtgcttgtaacctgcaaatcaaaataagcaacttcttgcc |
17875081 |
T |
|
| Q |
228 |
ttagaactgcttttaagtacctaactctcattcttgcagcttgtctt |
274 |
Q |
| |
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| || ||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
17875082 |
taagtactgcttttaagtacttgtatctcattcttgcagcttgtctt |
17875128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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