View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_8 (Length: 289)
Name: NF21047_low_8
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 5332834 - 5332945
Alignment:
| Q |
161 |
taatataagagactgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat |
260 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332834 |
taatataagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat |
5332933 |
T |
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| Q |
261 |
ataagcaaaaac |
272 |
Q |
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|||||||||||| |
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| T |
5332934 |
ataagcaaaaac |
5332945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 5350553 - 5350664
Alignment:
| Q |
161 |
taatataagagactgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat |
260 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350553 |
taatataagagattgtgaattggaagctttcatcaccaaatcaccaatgcatgcactctgctcttctcacagtcacagataacatgaaaagaaaaaccat |
5350652 |
T |
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| Q |
261 |
ataagcaaaaac |
272 |
Q |
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|||||||||||| |
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| T |
5350653 |
ataagcaaaaac |
5350664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 5332676 - 5332773
Alignment:
| Q |
1 |
ccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccttgaaaaattaatcaagctaaaaggaattaaacaataggtcgaagaactttccttc |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332676 |
ccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatcaagctaaaaggaattaaacaataggtcgaagaactttccttc |
5332773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 5350395 - 5350492
Alignment:
| Q |
1 |
ccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccttgaaaaattaatcaagctaaaaggaattaaacaataggtcgaagaactttccttc |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350395 |
ccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatcaagctaaaaggaattaaacaataggtcgaagaactttccttc |
5350492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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