View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21047_low_9 (Length: 276)
Name: NF21047_low_9
Description: NF21047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21047_low_9 |
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| [»] scaffold0855 (1 HSPs) |
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| [»] scaffold0847 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 26721228 - 26721489
Alignment:
| Q |
1 |
tttaagaatatcataatcgctgttaatcatctgaattacaaaaatctaatcttgcatgttgtcatcaacatcatcttacaatacaatagaattcaacgga |
100 |
Q |
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| T |
26721228 |
tttaagaatatcataatcgctgttaatcatctgaattacaaaaatctaatcttgcatgttgtcatcaacatcatcttacaatacaatagaattcaacgga |
26721327 |
T |
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| Q |
101 |
gcagtacactctctcaactgatcctcctcccaag-ccataacatcctacgtcatttccaagcttcattactaaaataaaatacaattaaggagctttatg |
199 |
Q |
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||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721328 |
gca-tacactctctcaactgatcctcctcccaagtccatgacatcctacgtcatttccaagcttcattactaaaataaaatacaattaaggagctttatg |
26721426 |
T |
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| Q |
200 |
gttcaatacaaaagaaaggnnnnnnnnngtactagtctggtccctttattttagtgtcattaa |
262 |
Q |
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| T |
26721427 |
gttcaatacaaaagaaaggataaaaaaagtactagtctggtccctttattttagtttcattaa |
26721489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 20342071 - 20342114
Alignment:
| Q |
14 |
taatcgctgttaatcatctgaattacaaaaatctaatcttgcat |
57 |
Q |
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| T |
20342071 |
taatcgccgttaatcatctgaatcacaaaaatctaatcttgcat |
20342114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 8591650 - 8591724
Alignment:
| Q |
60 |
tgtcatcaacatcatcttacaatacaatagaattcaacggagcagtacactctctcaactgatcctcctcccaagc |
135 |
Q |
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| T |
8591650 |
tgtcattaacatcatcttgcaaaa-aatagaattcaacggagcactacaatcccttagttgatcctcctcccaagc |
8591724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 4018114 - 4018057
Alignment:
| Q |
105 |
tacactctctcaactgatcctcctcccaagc-cataacatcctacgtcatttccaagc |
161 |
Q |
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| T |
4018114 |
tacactccctcaacaaatcctcctcccaagctcataacctcctacgccatttccaagc |
4018057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 31000460 - 31000499
Alignment:
| Q |
14 |
taatcgctgttaatcatctgaattacaaaaatctaatctt |
53 |
Q |
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| T |
31000460 |
taatcgctgttaatcatctgaatcacaaaaacctaatctt |
31000499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0855 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 2224 - 2184
Alignment:
| Q |
14 |
taatcgctgttaatcatctgaattacaaaaatctaatcttg |
54 |
Q |
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| T |
2224 |
taatctctgttaatcatctgaatcacaaaaacctaatcttg |
2184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 2389 - 2349
Alignment:
| Q |
14 |
taatcgctgttaatcatctgaattacaaaaatctaatcttg |
54 |
Q |
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| T |
2389 |
taatctctgttaatcatctgaatcacaaaaacctaatcttg |
2349 |
T |
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