View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_high_12 (Length: 240)
Name: NF21048_high_12
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46107908 - 46108132
Alignment:
| Q |
1 |
tgtataggaaaacaaatatattaaagaagacacaccaatcatgtttaaaagatcaataaaaatcaactcagttgataggaaattcaaggggtcaaagttc |
100 |
Q |
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| T |
46107908 |
tgtataggaaaacaaatatattaaagaagacacaccaatcatgtttaaaa---------------actcagttgataggaaattcaagggttcaaagttc |
46107992 |
T |
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| Q |
101 |
aattcccactaatgtgtgatgannnnnnnggcgaggtctatcctgattttggtaagccattcaactcatctaaatttttgtatnnnnnnnttatcgttta |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
46107993 |
aattcccactaatgtgtgatgacttttttggcgaggtctatcctaactttggtaagtcattcaactcatctaaatttttgtataaaaaaattatcgttta |
46108092 |
T |
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| Q |
201 |
gaagcataacttttatttatttttggtaaaaactagacca |
240 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
46108093 |
gaagcacaacttttatttatttttggtaaaaactagacca |
46108132 |
T |
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