View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_high_13 (Length: 238)
Name: NF21048_high_13
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_high_13 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44014685 - 44014465
Alignment:
| Q |
1 |
atggtcgattcttttgctgctgagattcagattctcggctacattcggcataggaacattgtgaggctcataggttattgttctaatgggagtgttaagc |
100 |
Q |
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| T |
44014685 |
atggtcgattcttttgctgctgagattcagattctcggctacattcggcataggaacattgtgaggctcataggttattgttctaatgggagtgttaagc |
44014586 |
T |
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| Q |
101 |
tacttctctataactttatccaaaatggtaatcttagacaacttttggaagggaatagaaacttagactgggaaactagatacaagatcgctgttggttc |
200 |
Q |
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| T |
44014585 |
tacttctctataactttatccaaaatggtaatcttagacaacttttggaagggaatagaaacttagactgggaaactagatacaagatcgctgttggttc |
44014486 |
T |
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| Q |
201 |
agctcaaggtttagcttatct |
221 |
Q |
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| T |
44014485 |
agctcaaggtttagcttatct |
44014465 |
T |
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Target: scaffold0131 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 12748 - 12693
Alignment:
| Q |
57 |
cattgtgaggctcataggttattgttctaatgggagtgttaagctacttctctata |
112 |
Q |
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| T |
12748 |
cattgcgacgctcataagttattgttctaatgggaatattaagcttcttctctata |
12693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 28754626 - 28754674
Alignment:
| Q |
66 |
gctcataggttattgttctaatgggagtgttaagctacttctctataac |
114 |
Q |
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| T |
28754626 |
gctcataagttattcttctaatgggaatattaagcttcttctctataac |
28754674 |
T |
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