View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21048_high_3 (Length: 617)
Name: NF21048_high_3
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_high_3 |
 | |
|
| [»] scaffold0172 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Complemental strand, 53416003 - 53415485
Alignment:
| Q |
19 |
accttttcaataggaacctcatgccgcttgcaacaggcaactgatatcctgggatctaggtagtttatcttggggacgtgccaagtgccacagtttttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53416003 |
accttttcaataggaacctcatgccgcttgcaacaggcaactgatatcctgggatctaggtagtttatcttggggacgtgccaagtgccacagtttttag |
53415904 |
T |
|
| Q |
119 |
atcttcttttgtatgcat--catgctgcattttcttaatttttgctctggtttgagatatcttttctctatcccgtacgatacatagatcacaatcacac |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53415903 |
atcttcttttgtatgcatatcatgctgcattttcttaatttttgcgctggtttgagatatcttttctctatcctgtacgatacatagatcacaatcacac |
53415804 |
T |
|
| Q |
217 |
attacacttgataattataatgtccaaagatgttaaggaagctgtttattacgcttcagtttcaagttctttttgttcttcccatccgaactcgttagag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415803 |
attacacttgataattataatgtccaaagatgttaaggaagctgtttattacgcttcagtttcaagttctttttgttcttcccatccgaactcgttagag |
53415704 |
T |
|
| Q |
317 |
gtggcttttcttttcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagtatatgtttgc |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415703 |
gtggcttttcttatcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagtatatgtttgc |
53415604 |
T |
|
| Q |
417 |
atgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctgaagttcatcaat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415603 |
atgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctgaagttcatcaat |
53415504 |
T |
|
| Q |
517 |
cttttcattcaactttgaa |
535 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
53415503 |
cttttcattcaactttgaa |
53415485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 535
Target Start/End: Complemental strand, 53412277 - 53411756
Alignment:
| Q |
19 |
accttttcaataggaacctcatgccgcttgcaacaggcaactgatatcctgggatctaggtagtttatcttggggacgtgccaagtgccacagtttttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53412277 |
accttttcaataggaacctcatgccgcttgcaccaggcaactgatatcctgggatctaggtagtttatcttgg--acgtgccaagtgccacagtttttag |
53412180 |
T |
|
| Q |
119 |
atcttcttttgtatgcat--catgctgcattttcttaatttttgctctggtttgagatatctttt-ctctatcccgtacgatacatagatcacaatcaca |
215 |
Q |
| |
|
||||||||| |||||||| || | |||||||||| ||||||||| |||||||||| |||||||| |||||||| ||| | ||||| ||||||||||| |
|
|
| T |
53412179 |
atcttctttcgtatgcatatcacgttgcattttctcaatttttgcgctggtttgagttatctttttctctatcctgtaggtgacataattcacaatcaca |
53412080 |
T |
|
| Q |
216 |
cattac-------acttgataattataatgtccaaagatgttaaggaagctgtttattacgcttca-gtttcaagttctttttgttcttcccatccgaac |
307 |
Q |
| |
|
||||| |||||||||||||||||| |||||| |||||||||||| |||||||||||| | ||||||||| || |||||||| ||||||| |
|
|
| T |
53412079 |
cattagtcattatacttgataattataatgtgtaaagatactaaggaagctgtatattacgcttcaggattcaagttcctt---ttcttcccgtccgaac |
53411983 |
T |
|
| Q |
308 |
tcgttagaggtggcttttcttttcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagta |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||| | |||||||| |
|
|
| T |
53411982 |
tcgttagaggtg-----aattttcttttcttgcccttttcaaatctattttcagctccctcaaagaagcctacaattaaaaagcaagtaaaatccaagta |
53411888 |
T |
|
| Q |
408 |
tatgtttgcatgctctctaaatt----taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcct |
503 |
Q |
| |
|
||||| | ||||| ||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||| ||||||||| ||| |
|
|
| T |
53411887 |
tatgtctacatgccctctaaattaaaataaaataaaatgagccagtgacgagaaattcatttacaccaaggtttccaaactctaaatagtattatcacct |
53411788 |
T |
|
| Q |
504 |
gaagttcatcaatcttttcattcaactttgaa |
535 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| |
|
|
| T |
53411787 |
gaagttcaacaatcttttcatttaactttgaa |
53411756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 535
Target Start/End: Original strand, 53366535 - 53367054
Alignment:
| Q |
19 |
accttttcaataggaacctcatgccgcttgcaacaggcaactgatatcctgggatctaggtagtttatcttggggacgtgccaagtgccacagtttttag |
118 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53366535 |
accttttcgataggaacctcatgccgtttgcaccaggcaactgttatccgaggatctaggtagtttatcttgg--acgtgccaagtgccacagtttttag |
53366632 |
T |
|
| Q |
119 |
atcttcttttgtatgcat--catgctgcattttcttaatttttgctctggtttgagatatctttt-ctctatcccgtacgatacatagatcacaatcaca |
215 |
Q |
| |
|
|||||||||||||||||| || | |||||||||| ||||||||| |||||||||| |||||||| |||||||| ||| | |||||| |||||||||||| |
|
|
| T |
53366633 |
atcttcttttgtatgcatatcacgttgcattttctcaatttttgcgctggtttgagttatctttttctctatcctgtaggttacataaatcacaatcaca |
53366732 |
T |
|
| Q |
216 |
cattacac-------ttgataattataatgtccaaagatgttaaggaagctgtttattacgcttcagt-ttcaagttctttttgttcttcccatccgaac |
307 |
Q |
| |
|
||||| | |||||||||||||||| |||||| |||||||| ||| ||||||||||||| ||||||||| |||| |||||| ||||||| |
|
|
| T |
53366733 |
cattagtcattataattgataattataatgtgtaaagatactaaggaaggtgtatattacgcttcaggattcaagttcctttt---cttcccgtccgaac |
53366829 |
T |
|
| Q |
308 |
tcgttagaggtggcttttcttttcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagta |
407 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||||||||||||| | ||| | |||||| ||||||||||||||| || |||||| | |
|
|
| T |
53366830 |
tcgttagaggtg-----acttttcttttcttgcctttttcaaatctattttcagctccctcagaaaagcctaaaattaaaaagcaagtcagatccaagaa |
53366924 |
T |
|
| Q |
408 |
tatgtttgcatgctctctaaatt---taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctg |
504 |
Q |
| |
|
|||| || ||||| | ||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
53366925 |
tatg-ttacatgcccactaaattaaaaaaaataaaatgagccagtgacaagaaattcatttacaccaaggtttccaaattctaaatagtattatcacctg |
53367023 |
T |
|
| Q |
505 |
aagttcatcaatcttttcattcaactttgaa |
535 |
Q |
| |
|
||||||| ||||||||||||| || |||||| |
|
|
| T |
53367024 |
aagttcaacaatcttttcatttaattttgaa |
53367054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 554 - 606
Target Start/End: Complemental strand, 53415497 - 53415445
Alignment:
| Q |
554 |
attcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415497 |
attcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
53415445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 531
Target Start/End: Complemental strand, 53318534 - 53318262
Alignment:
| Q |
250 |
taaggaagctgtttattacgcttcagt-ttcaagttctttttgttcttcccatccgaactcgttagaggtggcttttcttttcttttcttgccctttcca |
348 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||| | ||| ||||| ||||||| | ||||||||||||||| |||| || |||||||| | |
|
|
| T |
53318534 |
taaggaagctgtatattacgcttcaggattaaagttcctcctgtccttcctgtccgaacactttagaggtggcttttgttttttt-----gccctttcta |
53318440 |
T |
|
| Q |
349 |
aatctattttcagcttcttcaaatcagcctacaattaaaaagca----agttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgag |
444 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||||||||| | || |||||| ||||||||| || | | |||||||||| ||| || | || |
|
|
| T |
53318439 |
aatctattttcagctccttctaatttgcctacaattaaaaagtaagacagctagctctaagtatatggtt-ttttccctctaaatttcaaataatacaag |
53318341 |
T |
|
| Q |
445 |
ccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctgaagttcatcaatcttttcattcaactt |
531 |
Q |
| |
|
|||||||| |||||| |||||||||| ||| |||||||||| |||||| |||||||||| || |||||||| |||||||| |
|
|
| T |
53318340 |
ccagtgacgagaaatccattcacacccaggtttccaaattc--------attatcacctgaagttcgtcgatcttttcgttcaactt |
53318262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 606
Target Start/End: Complemental strand, 53318269 - 53318218
Alignment:
| Q |
555 |
ttcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
606 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
53318269 |
ttcaacttcgaaatttgttcactgtgagattttgaaacactacgttgatgat |
53318218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 595
Target Start/End: Complemental strand, 53411764 - 53411727
Alignment:
| Q |
558 |
aactttgaaatttgttcactgtgaatttttgaaacact |
595 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
53411764 |
aactttgaaatttgtgcactgtgattttttgaaacact |
53411727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 14923418 - 14923221
Alignment:
| Q |
19 |
accttttcaataggaacctcatgccgcttgcaacaggcaactgatatcctgggatctaggtagtttatcttggggacgtgccaagtgccacagtttttag |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14923418 |
accttttcaataggaacctcgtgccgcttgcaccaggcaactgatatcctgggatctaggtagtttatctt--ggacgtgccaagtgccacagtttttaa |
14923321 |
T |
|
| Q |
119 |
atcttcttttgtatgc--atcatgctgcattttcttaatttttgctctggtttgagatatc-ttttctctatcccgtacgatacatagatcacaatcaca |
215 |
Q |
| |
|
||||||||| || | |||| | | |||||||||||||||||| ||||||||| ||| |||||| ||||| ||| | |||||| |||||||||||| |
|
|
| T |
14923320 |
atcttctttagtcatcatatcacgttccattttcttaatttttgcgctggtttgatccatctttttctttatcctgtatgttacataaatcacaatcaca |
14923221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 331 - 535
Target Start/End: Complemental strand, 14923115 - 14922913
Alignment:
| Q |
331 |
cttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagtatatgtttgcatgctctctaaatt |
430 |
Q |
| |
|
||||| ||||||| || ||||| ||||||||| ||||||| |||||||||||| |||| || |||| | ||||||||||| ||||| ||||||||| |
|
|
| T |
14923115 |
ctttttttgccctgtcgtaatctgttttcagctccttcaaaagagcctacaattacaaagt--gtcagcttcgagtatatgtttacatgccctctaaatt |
14923018 |
T |
|
| Q |
431 |
taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctgaagttcatcaatcttttcattcaact |
530 |
Q |
| |
|
| |||||||||||||| |||| ||||||| || ||||||| || |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
14923017 |
tcaaacaaaatgagccggtgaggagaaattgatccacaccatggtttccaaattctaaagaatattatcaccttaagttcatcaatcttttcattcaact |
14922918 |
T |
|
| Q |
531 |
ttgaa |
535 |
Q |
| |
|
||||| |
|
|
| T |
14922917 |
ttgaa |
14922913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 2478 - 2640
Alignment:
| Q |
19 |
accttttcaataggaacctcatgccgcttgcaacaggcaactgatatcctgggatctaggtagtttatcttggggacgtgccaagtgccacagtttttag |
118 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||| |||||||| || |||||||||||||| ||| ||||| | ||| |||||||| || |
|
|
| T |
2478 |
accttttcaatgggaacctcgtgccgcttgcaccaggcaactgtaatcctggggtcgaggtagtttatctt--ggatgtgcctaatgctacagttttaag |
2575 |
T |
|
| Q |
119 |
atcttcttttgtatgc--atcatgctgcattttcttaatttttgctctggtttgagatatctttt |
181 |
Q |
| |
|
|||||||||||| | |||| | |||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
2576 |
atcttcttttgtcctcatatcacgttgcattttctcaatttttgcattggtttgagttatctttt |
2640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 2793 - 2844
Alignment:
| Q |
331 |
cttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaa |
382 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
2793 |
ctttccttgccctgtccaaatctactttcagctccttcagatcagcctacaa |
2844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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