View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21048_high_5 (Length: 524)
Name: NF21048_high_5
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_high_5 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Complemental strand, 10374118 - 10373619
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10374118 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
10374019 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10374018 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
10373919 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373918 |
attgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
10373819 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373818 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
10373719 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
10373718 |
gaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcgattctctttcttctc |
10373619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 10033796 - 10034295
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10033796 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgcccagattgaaaaaggatctaattcttccttccaaccattccgatccctt |
10033895 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
10033896 |
gagcgtataaagttcgacaacatggtcaattggaatgaatggattccctttgaaggcataaaatgtgcttttcctcgacttaaggctatagagttatata |
10033995 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033996 |
attgtccagaactaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
10034095 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034096 |
gcattggttgtcttcaataaaaaaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
10034195 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
|||||| |||| | ||| |||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10034196 |
catgtagcgattcacaactgttctaagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttggaactcaattctctttcttctc |
10034295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 9840657 - 9841150
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9840657 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgcccagattgaagaaggatctaattcttccttccaaccattcccatccctt |
9840756 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |
|
|
| T |
9840757 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaa---tgcttttcctcaacttaaggctatagagttacgca |
9840853 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9840854 |
attgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
9840953 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9840954 |
gcattggttgtcttcaataaaaaaaatgaatatcaatgggcttg---gtgaaagttcccaattgtcattgcttgagagtgattctccatgtatgatgcaa |
9841050 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
|||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9841051 |
gatgtagtgattgaaaagtgtgttaaactattagttgttccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctc |
9841150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 9851535 - 9852031
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851535 |
aatacgtggtatggagatgttggagacaattggcctggagttctattatgcccagattgaagaaggatctaattcttccttccaaccattcccatccctt |
9851634 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9851635 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtg |
9851734 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851735 |
attgtccaaaactaaggggatatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
9851834 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851835 |
gcgttggttgtcttcaataaaaaaaatgaatatcaatgggcttg---gtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaa |
9851931 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
||||||| ||| | ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||| |
|
|
| T |
9851932 |
gatgtagagattgaaaagtgtgttaagctattagctgtgccaaaattgattatgagaagcacttgtcttacacacttgagactcgattcactttcttctc |
9852031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 10128721 - 10129217
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10128721 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgcccagattgaaaaaggatctaattcttccttccaaccattccgatccctt |
10128820 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |
|
|
| T |
10128821 |
gagcatataaagttcgacaacatggtcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggctatagagttatgga |
10128920 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10128921 |
attgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
10129020 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10129021 |
gcattggttgtcttcaataaaaaaaatgaatatcaatgggcttg---gtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaa |
10129117 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
|||||| |||| | ||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
10129118 |
catgtagcgattcacaactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgagactctattctctttcttctc |
10129217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 10519281 - 10519777
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10519281 |
aatatgtggtatggagatgttggagacaattggcccggagttctattatgcccagattgaagaaggatctaattcttccttccaaccattcccatccctt |
10519380 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
10519381 |
gagcgtataatgttcgacaacatgctcaattggaatgaatggattcccttcgaaggcataaaatttgcttttcctcaacttaaggctataaagttacgta |
10519480 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |
|
|
| T |
10519481 |
attgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaataaaaggttgtgttcatctattggaaacaccatctacttt |
10519580 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10519581 |
gcattggttgtcttcaataaaaaaaatgaatatcaatgggcttg---gtgaaagttcccaattgtcattgcttgagagtgattctccttgtatgatgcaa |
10519677 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
||||||| ||| | ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10519678 |
gatgtagagattaaaaagtgtgttaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgggactcgattctctttcttctc |
10519777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 10262494 - 10262993
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatg-ccaagattgaagaaggatctaattcttccttccaaccattcccatccct |
115 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||| |||||||||||||||| ||||| |||||||| ||| |||||||||||||||||| | |||||| |
|
|
| T |
10262494 |
aatatgtggtatgaagaggttggagacaattggtccggagttctattatgtccaagga-gaagaaggttcttgttcttccttccaaccatttcaatccct |
10262592 |
T |
|
| Q |
116 |
tgagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgt |
215 |
Q |
| |
|
|||||||||||| ||| ||| | ||| ||||||||||||||| |||||| ||||||||||||| || ||||||||||||||| ||||| ||||||| | |
|
|
| T |
10262593 |
tgagcgtataaaattcaacagcttgccaaattggaatgaatggcttccctatgaaggcataaaactttcttttcctcgacttagagctatggagttacat |
10262692 |
T |
|
| Q |
216 |
aattgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatcta |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||| | ||| ||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
10262693 |
aattgtccagaactaagggaacatttgcctagcaaacttccttgcatagaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaaca |
10262792 |
T |
|
| Q |
313 |
ctctgcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgat |
412 |
Q |
| |
|
|| ||||||||||||| ||| |||| |||| |||||| |||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10262793 |
ctttgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttga---tggaaggacccaattgtcattgcttgagagtgattctccgtgtatgat |
10262889 |
T |
|
| Q |
413 |
gcaagatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttct |
512 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| || |
|
|
| T |
10262890 |
gcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtctaacacacttgaaactcagttctcttcct |
10262989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 516
Target Start/End: Complemental strand, 10432317 - 10431818
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| | |||||||||| || | ||||||| ||||| || ||||||||||||| |||||| ||||||||| |
|
|
| T |
10432317 |
aatatgtggtatgaagatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatccctt |
10432218 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||| | ||| ||||||| || |
|
|
| T |
10432217 |
gagcgtataaaattcgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacata |
10432118 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctac |
313 |
Q |
| |
|
||||||| |||||||||||||| ||||| | ||||||||| | |||||||||||||| ||||||||||||||||| ||| |||||||| ||| || |
|
|
| T |
10432117 |
attgtcctgaactaaggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacagagccaaacac |
10432018 |
T |
|
| Q |
314 |
tctgcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatg |
413 |
Q |
| |
|
| ||||||||||||| |||||||| || | ||||||||||||||||| | ||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10432017 |
tatgcattggttgtcgtcaataaagaaagttaatatcaatgggcttga---cggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatg |
10431921 |
T |
|
| Q |
414 |
caagatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttctt |
513 |
Q |
| |
|
||| ||||||| ||| | ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10431920 |
caacatgtagtgattgaaaactgtgttaagctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttctt |
10431821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 10197469 - 10197963
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||| |||||||||||||||| | || |||||||| ||| |||||||||||| ||||| ||| ||||| |
|
|
| T |
10197469 |
aatatgtggtatgaacatgttggagacaattggtccggagttctattatgtccagggagaagaaggttcttgttcttccttccagccatttccaaccctt |
10197568 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
10197569 |
gagcgtataaaattcgacaacatgccaaattggaatgaatggcttccctatgaaggcataaaatttgcttttcctcgacttagagctatggagttacgta |
10197668 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctac |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||| ||| || |
|
|
| T |
10197669 |
attgtcgagaactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacac |
10197768 |
T |
|
| Q |
314 |
tctgcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatg |
413 |
Q |
| |
|
| ||||||||||||| ||| |||| |||| |||||| ||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10197769 |
tttgcattggttgtcgtcagtaaagaaaattaatatcgatgggtttg---gtgaaaggacccaattgtcattgcttgagagtgattctccgtgtatgatg |
10197865 |
T |
|
| Q |
414 |
caagatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttc |
511 |
Q |
| |
|
|||||||||| ||||| | |||| |||| |||||||| | |||||| |||||| ||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
10197866 |
gaagatgtagtgattcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttc |
10197963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 10362074 - 10361594
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||| |||||||||||||| | |||||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
10362074 |
aatatgtggtatgaacatgttggagacaattggcctggagttctattatgtccagattgaagatggttctaattcttccttccaaccatttccatccctt |
10361975 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| || |
|
|
| T |
10361974 |
gagcgcataaatttcgacaacatgccaaattggaatgaatggattccctttgaaggcataaaatgtgcttttcctcaacttagagctatggagttacata |
10361875 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| | ||| | |
|
|
| T |
10361874 |
attgtccagaactaaggggacatttgccgagcaaccttccttgcatagaagaaattgtaatacaaggttgttctcatctattggaaacagagcccacttt |
10361775 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||| ||||||||| | | || || |||||||||| || ||| ||||| ||||||| |||| ||| |||||||| |||||||||||| |
|
|
| T |
10361774 |
gcattggttgtcgtcaataaaaaattttaagattgatgggcttga---tggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaa |
10361678 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactc |
500 |
Q |
| |
|
||| ||| |||| | || | || | | | | |||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10361677 |
catgcagtgattcaaaagtgcgctatgctgtcatctgtgccaaaattgattctgagaagcacttgtcttacactcttgggactc |
10361594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 10582406 - 10582903
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
10582406 |
aatatgtggtatggagatgttggagacaattggcctggagttctattatgtccagattgaagaaggttctaattcttccttccaaccatttccatccctt |
10582505 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
||| |||||| |||||||| || | ||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
10582506 |
gagtatataaaattcgacaatataccaaattggaataaatggcttccctttgaaggcatacaatttgcttttcctcaacttcgagctatgaagttacgta |
10582605 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
||||||| |||||| |||||||||||| | | | ||||| | |||||||||||||| |||| ||||||| |||||||||||||||| | ||| | |
|
|
| T |
10582606 |
attgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcccacttt |
10582705 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaa-tgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgca |
415 |
Q |
| |
|
|||||||||||| ||||||||| ||| | || || ||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10582706 |
gcattggttgtcgtcaataaaaaaaaattaagattgatgggcttg---gtgaaaggacccaattgttattgcttgagagtgattctccgtgtatgatgca |
10582802 |
T |
|
| Q |
416 |
agatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttct |
515 |
Q |
| |
|
||||| ||| || | || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10582803 |
agatgcagtgatggcaaactgcgttaacctattagctgtgccaaaattgattctgagaagcacttgtcttacacacttgagactctattctctttcttct |
10582902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 10090586 - 10091081
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||| |||||||||||||||| | || |||||||| ||| |||||||||||| ||||| ||| ||||| |
|
|
| T |
10090586 |
aatatgtggtatgaacatgttggagacaattggtccggagttctattatgtccagggagaagaaggttcttgttcttccttccagccatttccaaccctt |
10090685 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagt-tacgt |
215 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
10090686 |
gagcgtataaaattcgacaacatgccaaattggaatgaatggcttccctatgaaggcataaaatttgcttttcctcgacttagagctatggagtacacgt |
10090785 |
T |
|
| Q |
216 |
aattgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatcta |
312 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
10090786 |
aattgtcgagaactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaaca |
10090885 |
T |
|
| Q |
313 |
ctctgcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgat |
412 |
Q |
| |
|
|| ||||||||||||| ||| |||| |||| |||||| ||||| ||| ||||||| ||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
10090886 |
ctttgcattggttgtcgtcagtaaagaaaattaatatcgatgggtttg---gtgaaaggacccaattgtcattgcttgagagtgattctccatgtatgat |
10090982 |
T |
|
| Q |
413 |
gcaagatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttc |
511 |
Q |
| |
|
| |||||||||| ||||| | |||| |||| |||||||| | |||||| |||||| ||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
10090983 |
ggaagatgtagtgattcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttc |
10091081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 516
Target Start/End: Complemental strand, 11780255 - 11779759
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| |||||||| ||||||||| |||||| | || |||||||||||| | || |||| ||| || |||||||||||||||||||| |||||||| |
|
|
| T |
11780255 |
aatatgtggtatgatgatgttggatacaatttgttcgaagttctattatgtccagggagaagtaggttccaattcttccttccaaccatttccatccctc |
11780156 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
|||| |||||| || |||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| || |||| ||||| |||| |
|
|
| T |
11780155 |
gagcttataaaatttgacaacatgccaaattggaatgaatggtttccctttgaaggtataaaatttgcatttcctcgactcaaaactatggagttgcgta |
11780056 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| | |
|
|
| T |
11780055 |
attgtcctgaactaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctacttt |
11779956 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || |||| |||||| | ||| ||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
11779955 |
gcattggttgtcgtcaataaaagaaatgaatatcaaaggacttg---gtgaaaagacacaattgtcattgcttgatagtgattctctatctatgatgcaa |
11779859 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
||||||| ||| | |||| | || ||| || ||| |||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
11779858 |
catgtagtgattgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcatttgtcttacatacttgagactccattctctttcttctc |
11779759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 11771030 - 11771526
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| |||||||| ||| ||||| |||||| | || |||||||||||| | || |||| ||| || |||||||||||||||||||| |||||||| |
|
|
| T |
11771030 |
aatatgtggtatgatgatattggatacaatttgttcgaagttctattatgtccagggagaagtaggttccaattcttccttccaaccatttccatccctc |
11771129 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
|||| |||||| || |||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||| || |||| ||||| |||| |
|
|
| T |
11771130 |
gagcttataaaatttgacaacatgccaaattggaatgaatggcttccttttgaaggtataaaatttgcttttcctcgactcaaaactatggagttgcgta |
11771229 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
||||||| |||||||||| |||||| || ||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||| |||||||||| | |
|
|
| T |
11771230 |
attgtcctgaactaagggtacattttcctaccaaccttccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaaaaccatctacttt |
11771329 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || |||| |||||| | || ||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
11771330 |
gcattggttgtcgtcaataaaagaaatgaatatcaacggccttg---gtgaaaagacacagttgtcattgcttgatagtgattctctatctatgatgcaa |
11771426 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
||||||| ||| | | |||| || ||| || ||| |||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
11771427 |
catgtagtgattgaaaagtatgttgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctc |
11771526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 27 - 273
Target Start/End: Original strand, 10665332 - 10665578
Alignment:
| Q |
27 |
atggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| || | |||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10665332 |
atggagatgttggagacaattggcccggagttctattatgtccagattgaggaaggctcaagttcttccttccaaccatttccatcccttgagtgtataa |
10665431 |
T |
|
| Q |
127 |
agttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtccaga |
226 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| | |
|
|
| T |
10665432 |
aattcgacaacataccaaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttagagccatggagttacgtaattgtccaaa |
10665531 |
T |
|
| Q |
227 |
actaaggggacatttgcccaccaaccttccctccatagaagaaattg |
273 |
Q |
| |
|
||||| |||||||||||| | | | ||||| | ||||||||||||| |
|
|
| T |
10665532 |
actaaagggacatttgcctagccatcttccttgtatagaagaaattg |
10665578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 31 - 367
Target Start/End: Original strand, 10079220 - 10079556
Alignment:
| Q |
31 |
agatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataaagtt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| | |||| |||||||||||| |||||||||||||| ||||| || |
|
|
| T |
10079220 |
agatgttggagacaattggcccggagttctattatgtccagattgaagaaggctctgaatctttcttccaaccatttccatcccttgagcgcataaaatt |
10079319 |
T |
|
| Q |
131 |
cgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtccagaacta |
230 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||| ||||| |||| |||||||||||||| |||| |||||| | ||||||| |||||| |
|
|
| T |
10079320 |
taacaacatgccaaattggaatcaatggcttccctttgaaggaataaattttgtttttcctcgacttagaactatggagttagatgattgtcctgaacta |
10079419 |
T |
|
| Q |
231 |
aggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtctt |
330 |
Q |
| |
|
| ||| ||||| || | | ||||||| | ||||||||||||| | ||| ||||||| | ||||||||||||||||| ||||| || |||||||| | | |
|
|
| T |
10079420 |
aaggggcattttcctagcgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaacaccacctactttggattggttgccgt |
10079519 |
T |
|
| Q |
331 |
caataaaagaaatgaatatcaatgggcttgagagtga |
367 |
Q |
| |
|
|| ||||| |||| ||||||||||| |||| |||||| |
|
|
| T |
10079520 |
cagtaaaaaaaattaatatcaatggtcttgggagtga |
10079556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 31 - 367
Target Start/End: Original strand, 10186190 - 10186526
Alignment:
| Q |
31 |
agatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataaagtt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| | |||| |||||||||||| |||||||||||||| ||||| || |
|
|
| T |
10186190 |
agatgttggagacaattggcccggagttctattatgtccagattgaagaaggctctgaatctttcttccaaccatttccatcccttgagcgcataaaatt |
10186289 |
T |
|
| Q |
131 |
cgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtccagaacta |
230 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||| ||||| |||| |||||||||||||| |||| |||||| | ||||||| |||||| |
|
|
| T |
10186290 |
taacaacatgccaaattggaatcaatggcttccctttgaaggaataaattttgtttttcctcgacttagaactatggagttagatgattgtcctgaacta |
10186389 |
T |
|
| Q |
231 |
aggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtctt |
330 |
Q |
| |
|
| ||| |||||||| | ||||||| | ||||||||||||| | ||| ||||||| | |||||||||| |||||| ||||| || |||||||| | | |
|
|
| T |
10186390 |
aaggggcatttgcctagtgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggatacaccacctactttggattggttgccgt |
10186489 |
T |
|
| Q |
331 |
caataaaagaaatgaatatcaatgggcttgagagtga |
367 |
Q |
| |
|
|| ||||| |||| ||||||||||| |||| |||||| |
|
|
| T |
10186490 |
cagtaaaaaaaattaatatcaatggtcttgggagtga |
10186526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 36 - 500
Target Start/End: Original strand, 10502401 - 10502858
Alignment:
| Q |
36 |
ttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataaagttcgaca |
135 |
Q |
| |
|
||||||| ||||||||| |||||||||| || | | |||||||| ||| ||||||||||||||||||| || ||||||||| |||||| || || |
|
|
| T |
10502401 |
ttggagaaaattggcccagagttctattgtgtcg---tagaagaaggttctgattcttccttccaaccatttccctcccttgagtgtataacatttttca |
10502497 |
T |
|
| Q |
136 |
acatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtccagaactaagggg |
235 |
Q |
| |
|
|||||| |||||||| |||||| || |||||||||| | || ||||| |||||||| ||||| | | || ||| ||||||| | ||| | ||||| |
|
|
| T |
10502498 |
acatgccaaattggaaggaatggctttcctttgaaggaaacaattttgcctttcctcgtcttaaaattctgaagatacttaattgttctgaattgagggg |
10502597 |
T |
|
| Q |
236 |
acatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaata |
335 |
Q |
| |
|
|||| || | ||||| | | ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||| |||| ||| | |
|
|
| T |
10502598 |
gaatttaccttgccacctttctttcatagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgcctactttgcattggctgtcgtcattg |
10502697 |
T |
|
| Q |
336 |
aaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaagatgtagttattcgtgaat |
435 |
Q |
| |
|
||| || |||||||||||||||| |||||| | ||| | |||||||||| |||||| ||||| |||||||||||| ||||||| ||| || | |
|
|
| T |
10502698 |
aaaaaaggtaatatcaatgggcttg---gtgaaaagactcaattatcattgcttgggagtgactctccatgtatgatgcaacatgtagtcatttgtaggt |
10502794 |
T |
|
| Q |
436 |
gtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactc |
500 |
Q |
| |
|
|||||| | ||||| || |||||||| ||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
10502795 |
gtgttacgctattatctattccaaaaatgatt-tgagaagcacttgtcttcaacacttggaactc |
10502858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 336
Target Start/End: Original strand, 10530452 - 10530762
Alignment:
| Q |
26 |
tatggagatgttggagacaattggcccggagttctattatg-ccaagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtat |
124 |
Q |
| |
|
|||| |||| ||||||| ||||||| | |||||||||| || |||||| || ||||| || |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
10530452 |
tatgaagatattggagagaattggctcagagttctattgtgtccaagaagga-gaaggttcaaattcttccttccaaccatttccgtcccttgagcgtat |
10530550 |
T |
|
| Q |
125 |
aaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtcca |
224 |
Q |
| |
|
|| || | | ||||| ||||||||||||||| | || |||||||| | | ||||||||||| | ||||| || | |||||| |||||||||| |
|
|
| T |
10530551 |
aagatttcaaatcatgccaaattggaatgaatggctcccttttgaaggaaacagctttgcttttccatgtcttaaaactcttgagttatataattgtcca |
10530650 |
T |
|
| Q |
225 |
gaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggt |
324 |
Q |
| |
|
||| | ||||||||||| || | | |||| | ||||||||||||||| |||| ||||||| ||| |||||||||||||||| |||| |||||||| |
|
|
| T |
10530651 |
gaatttaggggacattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgctcgtctattggaaacaccacatactttgcattggc |
10530750 |
T |
|
| Q |
325 |
tgtcttcaataa |
336 |
Q |
| |
|
| || ||||||| |
|
|
| T |
10530751 |
tatcatcaataa |
10530762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 77 - 352
Target Start/End: Original strand, 10679294 - 10679568
Alignment:
| Q |
77 |
agaaggatctaattcttccttccaaccattcccatcccttgagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcata |
176 |
Q |
| |
|
|||||| || |||||||||||||||||||| || ||||||||| |||||| || | | ||||| ||||||||||||||| | || |||||||| | |
|
|
| T |
10679294 |
agaaggttcaaattcttccttccaaccatttccgtcccttgagtgtataagatttcaaatcatgccaaattggaatgaatggctcccttttgaaggaaac |
10679393 |
T |
|
| Q |
177 |
aaatttgcttttcctcgacttaaggctatagagttacgtaattgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaa |
276 |
Q |
| |
|
| ||||||||||| | ||||| || | |||||| ||||||||||||||| ||| ||||||| |||| | |||| | ||||||||||||||| || |
|
|
| T |
10679394 |
agctttgcttttccatgtcttaaaactcttgagttatataattgtccagaacttaggcgacattttcccagccacctatcttccatagaagaaattcaaa |
10679493 |
T |
|
| Q |
277 |
tatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaataaaagaaatgaatatcaa |
352 |
Q |
| |
|
|| ||||| | ||| |||||||||||||||| |||| |||||||| | || ||||||||| |||| || ||||| |
|
|
| T |
10679494 |
tagaaggttatgctcgtctattggaaacaccacatact-tgcattggctatcatcaataaaaaaaataaaaatcaa |
10679568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 516
Target Start/End: Original strand, 10665698 - 10665758
Alignment:
| Q |
456 |
ccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
10665698 |
ccaaaattgattatgagaagcacttgtcttacacacttggcactctattcactttcttctc |
10665758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Complemental strand, 55875 - 55379
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55875 |
aatatgtggtatggagatgttggagacaattggcccggagttctattatgcccagattgaataaggatctaattcttccttccaaccattcctatccctt |
55776 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
55775 |
gagtttataaagttcgacaacatgttcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtg |
55676 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55675 |
attgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
55576 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55575 |
gcattggttgtcttcaataaaaataatgaatatcaatgggcttg---gtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaa |
55479 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttcttctc |
516 |
Q |
| |
|
|||||| |||| | ||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
55478 |
catgtagcgattcacaactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaaactccattcactttcttctc |
55379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 26908684 - 26909175
Alignment:
| Q |
17 |
aatacgtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatccctt |
116 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||| || | |||||||| | ||||||| ||||| || |||| ||||||||||||||| | ||||||| |
|
|
| T |
26908684 |
aatacatggtatgaaaatgttggagacaattggcccagattactattatgtccagattgaggaaggctccaatttttccttccaaccatttcaatccctt |
26908783 |
T |
|
| Q |
117 |
gagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgta |
216 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||| ||||| ||||||||||||| || || ||| ||||||||||||| | |||| ||||| | || |
|
|
| T |
26908784 |
gagcgtataaaatttaacaacatgccaaattggaatcaatggcttccctttgaaggaatgaatttttcttttcctcgactcagaactattgagttgcata |
26908883 |
T |
|
| Q |
217 |
attgtccagaactaaggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
316 |
Q |
| |
|
|||||||| |||||| |||| |||||| | ||||||||| | ||||||||||||||||||| |||||| | ||||||||||||||||||||||||| | |
|
|
| T |
26908884 |
attgtccaaaactaaaaggacttttgcctagcaaccttccttgcatagaagaaattgtaataaaaggttgctatcatctattggaaacaccatctacttt |
26908983 |
T |
|
| Q |
317 |
gcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaa |
416 |
Q |
| |
|
|||||| |||| || ||| |||| |||||| ||||||||| || |||| || | ||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
26908984 |
acattgggtgtcgtccataccgaaaattaatatccatgggcttg---gtaaaaggaccatattgtcattgcttaagagtgattctccctgtatgatgcaa |
26909080 |
T |
|
| Q |
417 |
gatgtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgggactcaattctctttc |
511 |
Q |
| |
|
|||||||| |||| | |||||| | |||||| | | ||||||||||||||||||||||| |||||| ||||||| |||| |||||||||| |
|
|
| T |
26909081 |
gatgtagtgattcaaaattgtgttgggctattaggtttgccaaaattgattctgagaagcacatgtcttcaacacttgaaactctattctctttc |
26909175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 32 - 354
Target Start/End: Original strand, 11486846 - 11487168
Alignment:
| Q |
32 |
gatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataaagttc |
131 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||| | | ||| ||||||||||||||||||||||| |||||||||| |||||| || |
|
|
| T |
11486846 |
gatgttggagacaattggccaagagttctattgtgtcaaggaaggaaaagcttctaattcttccttccaaccattttcatcccttgaatgtataacattt |
11486945 |
T |
|
| Q |
132 |
gacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtccagaactaa |
231 |
Q |
| |
|
| |||||||| |||||||| |||||| |||| |||||||||| | ||| |||||||||| |||| || | ||||||| || ||||| || |||| |
|
|
| T |
11486946 |
gtcaacatgcaaaattggaaggaatggcttccttttgaaggcaaatttttttcttttcctcgtcttagaactcttgagttacatagttgtcatgagctaa |
11487045 |
T |
|
| Q |
232 |
ggggacatttgcccaccaaccttccctccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttc |
331 |
Q |
| |
|
||||||||||||| | | ||||||| | ||||||| ||||| ||| |||||||| | ||||| ||||||||||||||| || ||||||||||||| || |
|
|
| T |
11487046 |
ggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtc |
11487145 |
T |
|
| Q |
332 |
aataaaagaaatgaatatcaatg |
354 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
11487146 |
aataaaaaaaattgatatcaatg |
11487168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 17851194 - 17851017
Alignment:
| Q |
22 |
gtggtatggagatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcg |
121 |
Q |
| |
|
||||||||||||| ||||||| ||| || || ||||||||| ||| | || | |||||| || ||||||||||| |||||||| || ||||||||| | |
|
|
| T |
17851194 |
gtggtatggagatattggagagaatcggtccagagttctatcatgtccaggcaggagaaggttccaattcttcctttcaaccatttccgtcccttgagtg |
17851095 |
T |
|
| Q |
122 |
tataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaa |
199 |
Q |
| |
|
| ||| ||| |||||||| |||||||| |||||| ||||||||| |||||| || |||||||||||||| ||||| |
|
|
| T |
17851094 |
tttaatgtttcgcaacatgccaaattggaaggaatggcttccctttgtaggcatcaattttgcttttcctcgtcttaa |
17851017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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