View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_low_10 (Length: 320)
Name: NF21048_low_10
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 3895291 - 3895045
Alignment:
| Q |
18 |
agctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatccttt |
117 |
Q |
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| T |
3895291 |
agctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatccttt |
3895192 |
T |
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| Q |
118 |
gttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895191 |
gttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccaca |
3895092 |
T |
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| Q |
218 |
cagaacctgctgcttcattggttctgtcttttacctcataagcatag |
264 |
Q |
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| T |
3895091 |
cagaacctgctgcttcattggttctgtcttttacctcataagcatag |
3895045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 3895056 - 3894962
Alignment:
| Q |
133 |
tcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacagaacctgc |
227 |
Q |
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||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || | |||||||||| ||||||| ||||||| |||||||| |
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| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgccttctctgcagctctgtctgttccttctttggctttctcccacattgaacctgc |
3894962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 3895331 - 3895205
Alignment:
| Q |
44 |
cttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcata |
143 |
Q |
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| T |
3895331 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcata |
3895232 |
T |
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| Q |
144 |
atctctagccttctctccagcattctc |
170 |
Q |
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||||| |||||||||||||||| |
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| T |
3895231 |
gtctcttatactctctccagcattctc |
3895205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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