View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21048_low_12 (Length: 257)

Name: NF21048_low_12
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21048_low_12
NF21048_low_12
[»] chr4 (2 HSPs)
chr4 (13-247)||(45387067-45387303)
chr4 (182-237)||(6468713-6468768)
[»] chr7 (1 HSPs)
chr7 (154-237)||(24547693-24547777)
[»] chr8 (2 HSPs)
chr8 (150-237)||(30011717-30011805)
chr8 (140-213)||(26762864-26762938)
[»] chr6 (1 HSPs)
chr6 (147-217)||(8782979-8783048)
[»] chr5 (2 HSPs)
chr5 (147-217)||(16230756-16230827)
chr5 (184-228)||(31869163-31869207)
[»] chr3 (1 HSPs)
chr3 (199-241)||(20832201-20832243)
[»] chr1 (1 HSPs)
chr1 (174-239)||(45128718-45128783)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 45387067 - 45387303
Alignment:
Q  13 tttcttcatctgggtgctcttcatgtggtttagcttatagctcaagatttagcattaaggtttcccattgtattttatggcatgtaaaattcatgtataa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45387067 tttcttcatctgggtgctcttcatgtggtttagcttatagctcaagatttagcattaaggtttcccattgtattttatggcatgtaaaattcatgtataa 45387166  T
Q  113 nnnnnnnn--acacagtcaattatcgatgatccttagatcattaaaaacgtttgacttcaacataactatctctaaagtcataaatatgattggttgtga 210  Q
              |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45387167 tttttttttaacaccgtcaattatcgatgatccttagatcattaaaaacgtttgactttaacataactatctctaaagtcataaatatgattggttgtga 45387266  T
Q  211 tttgttggtagtgtaaaacattttacattgatgatgt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  45387267 tttgttggtagtgtaaaacattttacattgatgatgt 45387303  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 6468713 - 6468768
Alignment:
Q  182 tctaaagtcataaatatgattggttgtgatttgttggtagtgtaaaacattttaca 237  Q
    |||||||||||| |||||  ||||||||||||||||  |||||||||| |||||||    
T  6468713 tctaaagtcatacatatgcgtggttgtgatttgttgacagtgtaaaactttttaca 6468768  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 24547777 - 24547693
Alignment:
Q  154 aaaaacgtttgacttcaa-cataactatctctaaagtcataaatatgattggttgtgatttgttggtagtgtaaaacattttaca 237  Q
    ||||| |||||||||||| ||||||||  |||||| ||| | ||||||||||||||||||| |||  |||||||||| |||||||    
T  24547777 aaaaatgtttgacttcaatcataactacttctaaaatcacagatatgattggttgtgatttattgacagtgtaaaactttttaca 24547693  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 30011805 - 30011717
Alignment:
Q  150 cattaaaaacgtttgacttcaa-cataactatctctaaagtcataaatatgattggttgtgatttgttggtagtgtaaaacattttaca 237  Q
    ||||||||| |||||||||||| ||||||||  |||||| ||| | ||||||||| || ||||||||||  |||||||||  |||||||    
T  30011805 cattaaaaatgtttgacttcaatcataactacttctaaaatcacacatatgattgattttgatttgttgacagtgtaaaatgttttaca 30011717  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 26762864 - 26762938
Alignment:
Q  140 atccttagatcattaaaaacgtttgacttcaa-cataactatctctaaagtcataaatatgattggttgtgattt 213  Q
    ||||| |||||| |||||||||||||||| || ||||| ||  |||||||||||| | ||||||| |||||||||    
T  26762864 atcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtcatacaaatgattgattgtgattt 26762938  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 8782979 - 8783048
Alignment:
Q  147 gatcattaaaaacgtttgacttcaa-cataactatctctaaagtcataaatatgattggttgtgatttgttg 217  Q
    ||||||||||||  |||||||| || ||||||||  || ||||||||| |||||||||||||||||||||||    
T  8782979 gatcattaaaaa--tttgactttaatcataactacttcaaaagtcatatatatgattggttgtgatttgttg 8783048  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 16230827 - 16230756
Alignment:
Q  147 gatcattaaaaacgtttgacttcaa-cataactatctctaaagtcataaatatgattggttgtgatttgttg 217  Q
    ||||||| |||| ||||||||| || ||||||||  |||||| ||| | |||||||||||||||||||||||    
T  16230827 gatcatttaaaatgtttgactttaatcataactacttctaaaatcaaacatatgattggttgtgatttgttg 16230756  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 31869163 - 31869207
Alignment:
Q  184 taaagtcataaatatgattggttgtgatttgttggtagtgtaaaa 228  Q
    |||||||| | |||||| ||||||||||||||| |||||||||||    
T  31869163 taaagtcagacatatgactggttgtgatttgtttgtagtgtaaaa 31869207  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 20832201 - 20832243
Alignment:
Q  199 gattggttgtgatttgttggtagtgtaaaacattttacattga 241  Q
    ||||||||||||||||||  ||||||||||||||||| |||||    
T  20832201 gattggttgtgatttgttcatagtgtaaaacattttatattga 20832243  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 45128718 - 45128783
Alignment:
Q  174 taactatctctaaagtcataaatatgattggttgtgatttgttggtagtgtaaaacattttacatt 239  Q
    |||| ||||||||||||| | ||||||||| |||| ||  |||| ||||||||||| |||||||||    
T  45128718 taaccatctctaaagtcacacatatgattgattgtaatgcgttgatagtgtaaaactttttacatt 45128783  T

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