View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_low_13 (Length: 256)
Name: NF21048_low_13
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 3300585 - 3300371
Alignment:
| Q |
22 |
tttggattgaaggtcacattacttgatatatgttgtacttaatgtagtaagcttatcaataatatcttaccccacaaaaagacaccacacacatacacaa |
121 |
Q |
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| T |
3300585 |
tttggattgaaggtcacattacttgatatatgttgtacttaatgtagtaagcttatcaataatatcttactccacaaaaagacacaggacacatacacaa |
3300486 |
T |
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| Q |
122 |
gtatgtacaaaataggaaaccacccccaaaatttcccacgcaaaagccaaaccatgcagaacccttcatccacgtaattttattcactactcatttccaa |
221 |
Q |
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| T |
3300485 |
gta----caaaataggaaaccacctccaaaatttcccacgcaaaagccaaaccatgcaaaacccttcatctacgtaatgttattcactactcatttccaa |
3300390 |
T |
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| Q |
222 |
ctcattgcttacaatgttg |
240 |
Q |
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|||| | |||||||||||| |
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| T |
3300389 |
ctcaatacttacaatgttg |
3300371 |
T |
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