View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_low_14 (Length: 252)
Name: NF21048_low_14
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_low_14 |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 52919360 - 52919571
Alignment:
| Q |
41 |
caatccaactacatttttctatttgacatctagcaagcctgtcttcaatacatccttataattaataattgtttaaatttgacaaattttatcatttagt |
140 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52919360 |
caatccaactacatttttctatttgacatctagccagcctgtcttcaatacatccttataattaataattgtttaaatttgacaaattttatcatatagt |
52919459 |
T |
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| Q |
141 |
attcctttctaatgaattagataattgatataattctttaaacaagtccaacatctaataaacatctattttcgtacatttagagcaaatatgcattata |
240 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52919460 |
atgcccttctaatgaattagataattgatataattctttaaacaagtccaacatctaataaacatctattttcgtacaattagagcaaatatgcattata |
52919559 |
T |
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| Q |
241 |
ttctagttgtac |
252 |
Q |
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|||||||||||| |
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| T |
52919560 |
ttctagttgtac |
52919571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 21498934 - 21498970
Alignment:
| Q |
11 |
agaaaagtggtcaaaatttggagtatgacacaatcca |
47 |
Q |
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| T |
21498934 |
agaaaagtggtcaaaatttggggtatgacactatcca |
21498970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 35231093 - 35231303
Alignment:
| Q |
41 |
caatccaactacatttttctatttgacatctagcaagcctgtcttcaatacatccttataattaataattgtttaaatttgacaaattttatcatttagt |
140 |
Q |
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|||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||| |
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| T |
35231093 |
caatccaactacatttttctcgt-gacatctaggcagcctgtcttcaatccatccttataattaacaattctttaaatttgacaaattttatcatatagt |
35231191 |
T |
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| Q |
141 |
attcctttctaatgaattagataattgatataattctttaaacaagtccaacatctaataaacatctattttcgtacatttagagcaaatatgcattata |
240 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35231192 |
atgcccttctaatgaattagataattgatataattctttaaacaagtccaacatctattaaacatctattttcgtacaattagagcaaatatgcattata |
35231291 |
T |
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| Q |
241 |
ttctagttgtac |
252 |
Q |
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|||||||||||| |
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| T |
35231292 |
ttctagttgtac |
35231303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 38168393 - 38168422
Alignment:
| Q |
11 |
agaaaagtggtcaaaatttggagtatgaca |
40 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38168393 |
agaaaagtggtcaaaatttggagtatgaca |
38168422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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