View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_low_16 (Length: 243)
Name: NF21048_low_16
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 44968423 - 44968200
Alignment:
| Q |
5 |
agtgtctgtttggttgcgcgttcacaacctcaaaacgtggnnnnnnngttgcaaacgcgcgtcttgcttttcccatgatgtttggtaatctaaaacgtga |
104 |
Q |
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| T |
44968423 |
agtgtctgtttggttgcgcgttcacaacctcaaaacgtgatttttttgttgcaaacacgcgtcttgcttttcccatgatgtttggcaatctaaaacgtga |
44968324 |
T |
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| Q |
105 |
gtttgcaaaacgcagttataattacaaaacgcgagttggaccgaagctagaaatccaagcttctgcggcaaagcaaaagcgattaagaacttcaactttt |
204 |
Q |
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| T |
44968323 |
gtttgcaaaacgcagttataatgacaaaacgcgagttggaccgaagctagaaatccaagcttctgcggcaaagcaaaagcgattaagaacttcaactgtt |
44968224 |
T |
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| Q |
205 |
cagtgacttgtatagttaccaagt |
228 |
Q |
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| T |
44968223 |
cagtgacttgtatagttaccaagt |
44968200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 14054212 - 14054353
Alignment:
| Q |
85 |
tttggtaatctaaaacgtgagtttgcaaaacgcagttataattacaaaacgcgagttggaccgaagctagaaatccaagcttctgcggcaaagcaaaagc |
184 |
Q |
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| T |
14054212 |
tttggcaatctgaaaagtgaatttgcaaaacacagttaaagtgacaaaacgccagttgggtagaagctagaaatccaagcttttgcggcaaagcaaacgc |
14054311 |
T |
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| Q |
185 |
gattaagaacttcaacttttcagtgacttgtatagttaccaa |
226 |
Q |
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| T |
14054312 |
ggttacaattctcaactgtttagtgacttgtataattaccaa |
14054353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 14051973 - 14052005
Alignment:
| Q |
11 |
tgtttggttgcgcgttcacaacctcaaaacgtg |
43 |
Q |
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| T |
14051973 |
tgtttggttgcgcgttcacaacctccaaacgtg |
14052005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 25158753 - 25158651
Alignment:
| Q |
79 |
atgatgtttggtaatctaaaacgtgagtttgcaaaacgcagttataattacaaaacgcgagttggaccgaagctagaaatccaagcttctgcggcaaagc |
178 |
Q |
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|||||||||| ||||| |||||||| | || ||||| | |||| | | ||||||||| |||||| |||||||||||||||||||| ||||||||||| |
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| T |
25158753 |
atgatgtttgacaatctgaaacgtgaatctgtaaaacacggttaaagtgacaaaacgccagttgggtagaagctagaaatccaagcttttgcggcaaagc |
25158654 |
T |
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| Q |
179 |
aaa |
181 |
Q |
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||| |
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| T |
25158653 |
aaa |
25158651 |
T |
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