View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_low_3 (Length: 650)
Name: NF21048_low_3
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 14 - 634
Target Start/End: Complemental strand, 43323549 - 43322928
Alignment:
| Q |
14 |
gcataggagggtggtcttttattttgctactgtttgttcttaatatgtatagaacacaagtatttactattgtgacgtgtcaaaacaacgttggttatat |
113 |
Q |
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| T |
43323549 |
gcataggagggtggtcttttatttttctactgtttgttcttaatatgtatagaacacaagtatttactattgtgacttgtcaaaacaatgttggttatat |
43323450 |
T |
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| Q |
114 |
aagtagttgagattccaattttagtttgttgtgtctttcatcattttggatggtaaagtattcatccagcaaatatatctctttcttttaatagttgtcg |
213 |
Q |
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| T |
43323449 |
aagtagttgagattccaattttagtttgttgtgtctttcatcattttggatggtaaagtattcatccagcaaatatatctctttcttttaatagttgtcg |
43323350 |
T |
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| Q |
214 |
cagtaatggttatgttcacgtcacaatcctttatatgacaatatgacagagaattgcagtcaaatgcggccgatgtggcctcaa-tcagaatcgttttgc |
312 |
Q |
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| T |
43323349 |
cagtaatggttatgttcgcgtcacaatcctttatatgacaatatgacagagaattgcagccaaatgcggcccatgtggcctcaaatcagaatcgttttgc |
43323250 |
T |
|
| Q |
313 |
agttttggcaacctaaaaaactgttctgtcgcagccgccatatcgcggctgcagacctttatttaaagccctagtcctctgatctagaagctatactcta |
412 |
Q |
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| T |
43323249 |
agttttggcaacctaaaaaactgttctgtcgcagccgccatatcgcggctgcagacctttatttaaagccccagtcctctgatctagaagctatactcta |
43323150 |
T |
|
| Q |
413 |
atcaaagctttgatcataactgagctttctaatctaaataatcaatttatcaggatcttttatagttggttttatgcaaagttcggtgttaatgttattt |
512 |
Q |
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| T |
43323149 |
atcaaagctttgatcataactgagctttctaatctaaataatcaatttatcaggatcttttatagttggttttatgcaaagttcggtgttaatgttattt |
43323050 |
T |
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| Q |
513 |
tttgtaataatttacagtaagttgtttgtatgcaaagttcaatgctaatgttattttttgcaatgatatacagcaagttggtggtaggagtgctaaggta |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43323049 |
tttgtaataatttacagtaagttgtttgtatgcaaagttcaatgctaatgttattttttgcaatgatatacagcaagttggtggtaggagtgctaaggta |
43322950 |
T |
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| Q |
613 |
aactttccagaagtgccaaaag |
634 |
Q |
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| T |
43322949 |
aactttccagaagtgccaaaag |
43322928 |
T |
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