View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_low_7 (Length: 483)
Name: NF21048_low_7
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 22 - 465
Target Start/End: Complemental strand, 17139360 - 17138926
Alignment:
| Q |
22 |
agggttttggttagtttcaaagttatcatttgagttggagagttaagaaaaacctgagaaatgggttatttcaaacaatgttctgtcttgttgttggttg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| | |
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| T |
17139360 |
agggttttggttagtttcaaagttatcatttgagttggagagttaagaaaaaactgagaaatgggttatttaaaacaatgttctgtcttattgttggtag |
17139261 |
T |
|
| Q |
122 |
tgttacttgttgcatgtgcaaatggagaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17139260 |
tgttacttgttgcatgtgcaaatggagaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggt |
17139161 |
T |
|
| Q |
222 |
acttcatttttcttattgttcttattactgttttttgaatatatatttttcattacttcataacattgagttttacttcttccatatgaatgaaattttg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17139160 |
acttcatttttcttattgttcttattactgttttttgaatat-catttttctttacttcataacattgagttttacttcttccttatgaatgaaattttg |
17139062 |
T |
|
| Q |
322 |
atgttttatcaaattattaaccgtgtcggcgtgtcagtatgcatatattaatttctacatggtttgtgaaatgtgcaggggattttgataaatggaaaat |
421 |
Q |
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||||||||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17139061 |
atgttttatcaaattattagcggtgtcggcg--------tgcatatattaattcctacatggtttgtgaaatgtgcaggggattttgataaatggaaaat |
17138970 |
T |
|
| Q |
422 |
ttccagggccacagtttgagtcagtgactaatgataatttgatt |
465 |
Q |
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| T |
17138969 |
ttccagggccacagattgagtcagtgactaatgataatttgatt |
17138926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 47 - 465
Target Start/End: Original strand, 17345164 - 17345591
Alignment:
| Q |
47 |
tcatttgagttggagagttaagaaaaacctgagaaatgggttatttcaaacaatgttctgtcttgttgttggttgtgttacttgttgcatgtgcaaatgg |
146 |
Q |
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||||||||||||||||| | ||||||| |||| |||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17345164 |
tcatttgagttggagaggtgagaaaaatctgaaaaatgggttactccaaacaatgttatgtcttgttgttggtagtgttacttgttgcatgtgcaaatgg |
17345263 |
T |
|
| Q |
147 |
agaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggtacttcatttttcttattgttcttat |
246 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
17345264 |
agaagatccttataggttttacaattggaatgttacatatggagatatttatccacttggagttaaacaacaggtacttaatttttcttattgttcctat |
17345363 |
T |
|
| Q |
247 |
tactgttttttgaatatata-----tttttca----ttacttcataacattgagttttacttcttccatatgaatgaaattttgatgttttatcaaatta |
337 |
Q |
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| ||||||||||||| | || ||||| | || ||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||| |
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| T |
17345364 |
tgctgttttttgaatttctaattgtttttttacttcatagttcataacattgagttttacttctttcttatgaatgaaatttggatgttttctcaaatta |
17345463 |
T |
|
| Q |
338 |
ttaaccgtgtcggcgtgtcagtatgcatatattaatttctacatggtttgtgaaatgtgcaggggattttgataaatggaaaatttccagggccacagtt |
437 |
Q |
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||| | |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
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| T |
17345464 |
ttagcggtgtcggcgtgtcagtgtccatatattaatttctatatggtttgtgaaatgtgcaggggattttgataaatggacaatttcctgggccacagat |
17345563 |
T |
|
| Q |
438 |
tgagtcagtgactaatgataatttgatt |
465 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
17345564 |
tgagtcagtgactaatgataatttgatt |
17345591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 28942218 - 28942145
Alignment:
| Q |
148 |
gaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggt |
221 |
Q |
| |
|
|||||||||||||| || | | | |||| | |||| |||||||| ||||||||||| || |||||||||||||| |
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| T |
28942218 |
gaagatccttatagattctttgactggactattacttatggtgacatttatccactcggtgttaaacaacaggt |
28942145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 55294115 - 55294156
Alignment:
| Q |
181 |
acatatggtgatatttatccacttggagttaaacaacaggta |
222 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
55294115 |
acatatggtgatatctatcctcttggtgttaaacaacaggta |
55294156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 37092584 - 37092503
Alignment:
| Q |
140 |
caaatggagaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggt |
221 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
37092584 |
caaatggagaagacccttataggttctatacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggt |
37092503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 465
Target Start/End: Complemental strand, 37092420 - 37092337
Alignment:
| Q |
381 |
tggtttgtgaaatgtgcaggggattttgataaatggaaaatttccagggccacagtttgagtcagtgactaatgataatttgatt |
465 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||||| | |||||||| |||||| |||| || || ||||||||||| |||||| |
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| T |
37092420 |
tggtttatgaaatg-gcaggggatattgataaatggacagtttccaggaccacagattgaatctgtcactaatgataacttgatt |
37092337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 359
Target Start/End: Original strand, 30404886 - 30404920
Alignment:
| Q |
325 |
ttttatcaaattattaaccgtgtcggcgtgtcagt |
359 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
30404886 |
ttttttcaaattattaaccgtgtcggcgtgtcagt |
30404920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 359
Target Start/End: Original strand, 17341700 - 17341734
Alignment:
| Q |
325 |
ttttatcaaattattaaccgtgtcggcgtgtcagt |
359 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
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| T |
17341700 |
ttttatcaaattattaacggtgtcggcgtgtcagt |
17341734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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