View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21048_low_8 (Length: 329)
Name: NF21048_low_8
Description: NF21048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21048_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 40893994 - 40893680
Alignment:
| Q |
1 |
aaattcaatttaaaaatgaagatgggtgagtgaatggggtgacagtagttcattcagtcagctcaaaaccaaaacccacaaaaccataactctatcaaag |
100 |
Q |
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| T |
40893994 |
aaattcaatttaaaaatgaagatgggtgagtgaatggggtgacagtagttccttcagtcagctcaaaaccaaaacccacaaaaccataagtctatcaaag |
40893895 |
T |
|
| Q |
101 |
agattcagatttgataccagaaacaaagacctaaacaccattagttcaaaacccatatgagaattacgaaataaggatctcataaaagaagtatcggaga |
200 |
Q |
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| T |
40893894 |
agattcagatttgataccaaaaacaaagacctaaacaccattagttcaaaacccatatgagaatttcgaaataaggatctcataaaagaagtatcggaga |
40893795 |
T |
|
| Q |
201 |
tagtataaattaaaacaatggtaccaaattttagtcttcttctaaatatgagtagaaattatgaatgtgaaaatctcctcttccaaatgaattctaggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40893794 |
tagtataaattaaaacaatggtaccaaattttagtcttcttctaaatatgagtagaaattatgaatgtgaaaatctcctcttcctgatgaattctaggtt |
40893695 |
T |
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| Q |
301 |
taagagggtgagaag |
315 |
Q |
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| T |
40893694 |
taagagggtgagaag |
40893680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31621301 - 31621235
Alignment:
| Q |
1 |
aaattcaatttaaaaatgaagatgggtgagtgaatggggtgacagtagttcattcagtcagctcaaa |
67 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |
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| T |
31621301 |
aaattcaatttagaaatgaagatgggtgagtgaatggggggacggtagttccttcagtcagctcaaa |
31621235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36666985 - 36666918
Alignment:
| Q |
1 |
aaattcaatttaaaaatgaagatgggtgagtgaat-ggggtgacagtagttcattcagtcagctcaaa |
67 |
Q |
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|||||||||||| ||||||||||| |||||||||| |||| ||| ||||||| ||||||||| ||||| |
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| T |
36666985 |
aaattcaatttagaaatgaagatgagtgagtgaatgggggggacggtagttccttcagtcagttcaaa |
36666918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36574829 - 36574895
Alignment:
| Q |
1 |
aaattcaatttaaaaatgaagatgggtgagtgaatggggtgacagtagttcattcagtcagctcaaa |
67 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |
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| T |
36574829 |
aaattcaatttagaaatgaagatgggtgagtgaatggggggacggtagttccttcagtcagctcaaa |
36574895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26530375 - 26530441
Alignment:
| Q |
1 |
aaattcaatttaaaaatgaagatgggtgagtgaatggggtgacagtagttcattcagtcagctcaaa |
67 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||| ||||||| |
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| T |
26530375 |
aaattcaatttagaaatgaagatgggtgagtgaatggggggacgatagttccttcagtcggctcaaa |
26530441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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