View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21049_high_1 (Length: 413)
Name: NF21049_high_1
Description: NF21049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21049_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 40326960 - 40326575
Alignment:
| Q |
18 |
attagtaccactgtaattattggtatataaaatattggtatccttatatgatgannnnnnngtgggtaaatcaggttttacagctgaagatcaagggatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326960 |
attagtaccactgtaattattggtatataaaatattggtatccttatatgatgatttttttgtgggtaaatcaggttttacagctgaagatcaagggatt |
40326861 |
T |
|
| Q |
118 |
tcagaaaaggttatcaaaagggcattttctgcaacagatgatgattttttgtctctagtgaagaagcaatggcaaaacaaaccacagatagcatctgctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326860 |
tcagaaaaggttatcaaaagggcattttctgcaacagatgatgattttctgtctctagtgaagaagcaatggcaaaacaaaccacagatagcatctgctg |
40326761 |
T |
|
| Q |
218 |
gtacatgttgtttggcggggataatttgcaacggtaagctgtatattgcaaatgcaggagactcaagggctgtgttaggaagagtgaggaggggaacaag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326760 |
gtacatgttgtttggcggggataatttgcaacggtatgctgtatattgcaaatgcaggagactcaagggctgtgttaggaagagtgaggaggggaacaag |
40326661 |
T |
|
| Q |
318 |
ggaaacattagctgttcagttatctacagaacacaatgttaatatagaaactgagagagatgatgttcggtcaaagcacccctatg |
403 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326660 |
ggaaacattagccgttcagttatctacagaacacaatgttaatatagaaactgagagagatgatgttcggtcaaagcacccctatg |
40326575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 359
Target Start/End: Complemental strand, 28939094 - 28938853
Alignment:
| Q |
118 |
tcagaaaaggttatcaaaagggcattttctgcaacagatgatgattttttgtctctagtgaagaagcaatggcaaaacaaaccacagatagcatctgctg |
217 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| || |||| | || || ||||| || || |||| || | ||||| || ||||| || | |
|
|
| T |
28939094 |
tcagaaaatgtgatcaaaagggcattttcagcaacagaggagagttttctatcacttgtgaataaacagtggctaagacagccacatattgcatcagcag |
28938995 |
T |
|
| Q |
218 |
gtacatgttgtttggcggggataatttgcaacggtaagctgtatattgcaaatgcaggagactcaagggctgtgttaggaagagtgaggaggggaacaag |
317 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| || | | |||||||||||| | || |||||||||| |||||||||||| | ||||| |||||| |
|
|
| T |
28938994 |
gtacttgttgtttggtggggataatttgcaatggactggtatatattgcaaattctggtgactcaagggtggtgttaggaagactagagagggcaacaag |
28938895 |
T |
|
| Q |
318 |
ggaaacattagctgttcagttatctacagaacacaatgttaa |
359 |
Q |
| |
|
|||||||| ||| | || |||||| ||||||| |||||||| |
|
|
| T |
28938894 |
ggaaacatcagccatacaattatctgcagaacataatgttaa |
28938853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University