View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21049_high_2 (Length: 412)
Name: NF21049_high_2
Description: NF21049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21049_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 31836223 - 31835807
Alignment:
| Q |
1 |
cttgttatcaaataggagcttttataggccttttcacttcaatcttcaattcctgcatcagtgaatctaaccaggcagcttgacaagctgcaagagatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31836223 |
cttgttatcaaataggagcttttataggccttttcacttcaatcttcaattcctgcatcagtgaatctaaccaggcagcttgacaagctgcaagagatcc |
31836124 |
T |
|
| Q |
101 |
ttatgatgatcaccttttcg---------------tgtcagtggtgatcattcatcttcttttcaatcacttagtatgttttcaatttctttcttggttt |
185 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31836123 |
ttatgatgatcaccttttcgatcttatcttcctcgtgtcagtggtgatcattcatcttcttttcaatcacttagtatgttttcaatttctttcttggttt |
31836024 |
T |
|
| Q |
186 |
ttggtttgtatttctaaaatgactcttgtaaaatgcttgaaaaattgaactctataaggtattttctattcttgagtttgttggttaacatcttggagaa |
285 |
Q |
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||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31836023 |
ttggtttgtgtttctagaatgactcttgtaaattgcttgaaaaattgaactctataaggtattttctattcttgagtttgttggttaacatcttggagaa |
31835924 |
T |
|
| Q |
286 |
agcttttggagcatgtatcaaaagactcttgtttgtatttgtatggtttgttaatcctttaggattattacgttgtccctaattttgttttttgtttatg |
385 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
31835923 |
agcttttggagcatgtatcaaaagactctcgtttgtatttgaatggtttgttaatcctttaggattgttactttgtccctaattttgttttttgtttatg |
31835824 |
T |
|
| Q |
386 |
tggtttcttctcctttg |
402 |
Q |
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||||||||||||||||| |
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| T |
31835823 |
tggtttcttctcctttg |
31835807 |
T |
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