View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21049_high_3 (Length: 258)
Name: NF21049_high_3
Description: NF21049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21049_high_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 48527533 - 48527781
Alignment:
| Q |
10 |
aagaatataagggattttgtgagagcctctttataattaaattgaccctggacaagtatcatgcttccttggaacaaagtaagccatgctacaatgattg |
109 |
Q |
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| T |
48527533 |
aagaatataagggattttgtgagagcctctttataattaaattgaccctggacaagtatcatgcttccttggaacaaagtaagccatgctacaatgattg |
48527632 |
T |
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| Q |
110 |
cccaatatactcttttagaatccatgagaattacgctaataaaattcaaccttgtaagatgaagctctcaaatggagtttatatagaatatatgtaatgt |
209 |
Q |
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| T |
48527633 |
cccaatatacacttttagaatccatgagaattacgctaataaaattcaaccttgtaagatgaagctctcaaatggagtttatatagaatatatgtaatgt |
48527732 |
T |
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| Q |
210 |
aaagattggtaacaaattctttgatttgggtgttggttttattttgtga |
258 |
Q |
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| T |
48527733 |
aaagattggtaacaaattctttgatttgggtgttggttttattttgtga |
48527781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 7222855 - 7222969
Alignment:
| Q |
22 |
gattttgtgagagcctctttataattaaattgaccctggacaagtatcatgcttccttggaacaaagtaagccatgctacaatgattgcccaatatactc |
121 |
Q |
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| T |
7222855 |
gattttgtgagagcttccttgtagttaaattgacccttaacaagtatcatgtttccttggaacaaagcaagacatgttgcaatgatggccaaatatactc |
7222954 |
T |
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| Q |
122 |
ttttagaatccatga |
136 |
Q |
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| T |
7222955 |
ttttattatccatga |
7222969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 50303400 - 50303285
Alignment:
| Q |
10 |
aagaatataagggattttgtgagagcctctttataattaaattgaccctggacaagtatcatgcttccttggaacaaagtaagccatgctacaatgattg |
109 |
Q |
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||||| ||||| |||||| | |||| ||||| |||||||||||||||| |||||||||| |||||||||||| |||||||| ||| | |||||| || |
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| T |
50303400 |
aagaaaataagagattttattggagcttctttgtaattaaattgacccttaacaagtatcacgcttccttggaataaagtaagtaatgttgcaatga-tg |
50303302 |
T |
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| Q |
110 |
cccaatatactctttta |
126 |
Q |
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| T |
50303301 |
cccaatatactatttta |
50303285 |
T |
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