View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21049_low_4 (Length: 249)
Name: NF21049_low_4
Description: NF21049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21049_low_4 |
 | |
|
| [»] scaffold1043 (1 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 8795194 - 8794995
Alignment:
| Q |
1 |
aacaaactatatacgaccgcttatactgttatgaagtgtcaccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgca |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8795194 |
aacaaactatatatgaccgcttatcctgttatgaagtgtcatcctaaattccaaaaataattattactattatttattcaaaaataaagtttgattcgca |
8795095 |
T |
|
| Q |
101 |
gcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcac |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
8795094 |
gcggagaatgtcaaataaaaacctttctattaatataaaaattctcccacaaaatttaggataccacattaactcataacaaacataattcacatttcac |
8794995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 23906691 - 23906886
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||| ||||||||| |||||||||||||||| | |||| | ||||| |
|
|
| T |
23906691 |
caccctaaattccaataataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgtcaaataaaaacttctctaatgatatagg |
23906790 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
23906791 |
aattcttccacaagatttaggagatcacattgactcataacaaacataattcagatttcacttcattaaaaattatagtaatattaacattgaatc |
23906886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 20186459 - 20186271
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | |||||| |||||||| ||||||||| ||||| ||||||||| || || ||||||||| |
|
|
| T |
20186459 |
caccctaaat-ccaaaaataattattactattatttaattaaaaatggagtttgattcgcagcggaaagtgttaaataaaaaatttcttaataatataaa |
20186361 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacat |
229 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||| |||||||||| |||||||| ||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
20186360 |
aattcttccacaagatgtaggatatcacattgaatcataacaaatataattcagatttcacttccttgaaaattataataatattaacat |
20186271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 39528324 - 39528135
Alignment:
| Q |
53 |
aaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaa-------cctttctattaatataaaaattct |
145 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||| | ||||||||| ||||||||||||| | |||||||| ||||| ||||| | |
|
|
| T |
39528324 |
aaaaataattattactactatttattcaaaaatagagtttgattcacagcggagaatgtcaaataaaaaataaaaacatttctattgatatagaaattat |
39528225 |
T |
|
| Q |
146 |
tccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
|| ||||||||||||||| ||| || ||||||||||||||||||||| ||||||||||| | ||| ||| |||||||||||||| ||||| |
|
|
| T |
39528224 |
tctacaagatttaggataacacattaactcataacaaacataattcatatttcacttccttgaaacttataataatattaacatcgaatc |
39528135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 35923497 - 35923333
Alignment:
| Q |
41 |
accctaaattccaaaaataattattactattatttattcaaaaataaagtttgatcc-gcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||||| ||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
35923497 |
accctaaat-ccaaaaataattattgctattaattatttaaaaatagagtttgattttgcagcggagagtgtcaaataaaagcatttctattaatataag |
35923399 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcat-aacaaacataattcacatttcacttcc |
204 |
Q |
| |
|
|||||| |||| |||||||||||| ||| | ||||||| || |||||||||||||||||||||||| |
|
|
| T |
35923398 |
aattctcccactagatttaggatatcacatagactcataaaaaaacataattcacatttcacttcc |
35923333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 22524310 - 22524480
Alignment:
| Q |
53 |
aaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaa |
152 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||| ||||| || |||||| |||| |||||||||||||| || ||| |||||||| |||| ||||| || |
|
|
| T |
22524310 |
aaaattaattattactattatttaattaaaaatagagtttaattcgcagcagagaatgtcaaataaaaactttcctaataatataagaatttttccataa |
22524409 |
T |
|
| Q |
153 |
gatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatatt |
224 |
Q |
| |
|
|| | |||||| ||| |||||||||||||||||||||| ||||||||||| | ||||| | ||||||||| |
|
|
| T |
22524410 |
ga-tcaggatatcacaccgactcataacaaacataattcagatttcacttccttgaaaatgataataatatt |
22524480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 23248284 - 23248174
Alignment:
| Q |
125 |
ttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatatt |
224 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| | |||||| |||| |||| |
|
|
| T |
23248284 |
ttctattaatataagaattctttcacaagatttaggataccacattgattcataacgaacataattcacatttcacttccttgaaaattgtaatactatt |
23248185 |
T |
|
| Q |
225 |
aacattgaatc |
235 |
Q |
| |
|
||||| ||||| |
|
|
| T |
23248184 |
aacatcgaatc |
23248174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 22520717 - 22520782
Alignment:
| Q |
43 |
cctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||| || |||||||| |||||||||||| |
|
|
| T |
22520717 |
cctaaattccaaaaataattattactattatttaattaaaagtagagtttgattcgcagcggagag |
22520782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 22520799 - 22520858
Alignment:
| Q |
176 |
ataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
||||||||||||||||| |||||||| | | ||||||| |||||||||||||| ||||| |
|
|
| T |
22520799 |
ataacaaacataattcatatttcactctcttgaaaattataataatattaacatcgaatc |
22520858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 16075077 - 16074888
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||| |||||||| |||| |||| ||||||| |||||||| | |||| ||||||| |
|
|
| T |
16075077 |
caccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcaacggaaagtgtcagataaaaacttctctaataatatagg |
16074978 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacat |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
16074977 |
aattcttccacaagatttaggatatcacattgactcataacaaacataactcagatttcacttcattaaaaattataataatattaacat |
16074888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 3090394 - 3090225
Alignment:
| Q |
60 |
attattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagatttag |
159 |
Q |
| |
|
||||||| ||||||| ||| |||| | |||||||| || |||||| | ||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
3090394 |
attattattattattcatttgaaaaaagagtttgattcgtagcggaaaatgtcaaataaattt-tttctattaatatatgaattcttccacaagatttag |
3090296 |
T |
|
| Q |
160 |
g--ataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacat |
229 |
Q |
| |
|
| |||||| ||||||||||| |||||||||||||| ||||| | |||||| |||| ||||||||| |
|
|
| T |
3090295 |
gatataccatattgactcataa-tgtcataattcacattttacttctttgaaaattgtaatactattaacat |
3090225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 14744509 - 14744699
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||| | |||||||| ||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
14744509 |
caccctaaatcccaaaaataattattactattattgattcgaaaacagagtttgattcgcagcggaaaatgtcaaataaaaacttttctattaatataag |
14744608 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcat----aacaaacataattcacatttcacttccctaaaaattacaataatattaa |
226 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
14744609 |
aattcttccacaaaatttaggataccacattgactcataaaaaaaaaacataattcacatttcacttccttaaaaattttaatactattaa |
14744699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 27122886 - 27122735
Alignment:
| Q |
54 |
aaaataattattactattatttattcaaaaa--taaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccaca |
151 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||| || | |||| ||||||||||||||||||| || |||| ||||||| |||||| ||||| |
|
|
| T |
27122886 |
aaaataattattactattatttataaaaaaaaatagagtttaattctcagcagagagtgtcaaataaaaactttcctataaatataagaattctcccaca |
27122787 |
T |
|
| Q |
152 |
agatttaggataccacgttgactcataacaaacataattcacatttcacttc |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27122786 |
agatttaggataccacattgactcataacaaacataattcacatttcacttc |
27122735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 31495694 - 31495498
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
138 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||| |||| ||||| | |||||||| | | || || | |||||||||||||| ||||||||||||||| |
|
|
| T |
31495694 |
caccctaagtcccaaaaataaatattactattattcattcgaaaaacagagtttgattcacggcagaaaatgtcaaataaaaacttttctattaatataa |
31495595 |
T |
|
| Q |
139 |
aaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
31495594 |
gaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaattattataatattaacattgaatc |
31495498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 31501080 - 31500884
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
138 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||| |||| ||||| | |||||||| | | || || | |||||||||||||| ||||||||||||||| |
|
|
| T |
31501080 |
caccctaagtcccaaaaataaatattactattattcattcgaaaaacagagtttgattcacggcagaaaatgtcaaataaaaacttttctattaatataa |
31500981 |
T |
|
| Q |
139 |
aaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
31500980 |
gaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaattattataatattaacattgaatc |
31500884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 31515584 - 31515388
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
138 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||| |||| ||||| | |||||||| | | || || | |||||||||||||| ||||||||||||||| |
|
|
| T |
31515584 |
caccctaagtcccaaaaataaatattactattattcattcgaaaaacatagtttgattcacggcagaaaatgtcaaataaaaacttttctattaatataa |
31515485 |
T |
|
| Q |
139 |
aaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
31515484 |
gaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaattattataatattaacattgaatc |
31515388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 34486483 - 34486669
Alignment:
| Q |
56 |
aataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagat |
155 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||| || |||||||||||| |||||| ||||||||| |
|
|
| T |
34486483 |
aataattattcctattatttattcaaaaatagagtttgattcgcagcggagagtgtaaaat-aaaactttgctattaatataagaattctcccacaagat |
34486581 |
T |
|
| Q |
156 |
ttaggataccacgttgactcataacaaacataattcacat-ttcacttccctaaaaattacaataatattaacattgaatcctatgct |
242 |
Q |
| |
|
||||||||| || |||||||||| |||||||| ||||||| ||||||| | ||||||| || |||||||| || ||||||| |||| |
|
|
| T |
34486582 |
ttaggatacaacattgactcatagcaaacatagttcacatagacacttccttgaaaattataacaatattaatatcgaatcctttgct |
34486669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 31475858 - 31475662
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
138 |
Q |
| |
|
|||||||| | |||||||||| ||||||||| ||| |||| ||||| | |||||||| | | || || | |||||||||||||| ||||||||||||||| |
|
|
| T |
31475858 |
caccctaagtcccaaaaataaatattactataattcattcgaaaaacagagtttgattcacggcagaaaatgtcaaataaaaacttttctattaatataa |
31475759 |
T |
|
| Q |
139 |
aaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
31475758 |
gaattcttctgcaagatttaggatatcagattgactcataacaaacataattcaaatttcccttccttgaaaattattataatattaacattgaatc |
31475662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 7847344 - 7847510
Alignment:
| Q |
62 |
tattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagatttagga |
161 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || | ||| ||||||||||||||||| || | |||||||| |||| |||||||||||||| || |
|
|
| T |
7847344 |
tattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaatataagaatttttccacaagatttaaga |
7847443 |
T |
|
| Q |
162 |
taccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaaca |
228 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
7847444 |
taccacattgactcatagcaaacataattcacatttcacttccttgaaaattataataatattaaca |
7847510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 8885019 - 8885200
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| || |||||||| |||||||| ||||| ||| ||||||||||||| ||| || |||||||| |
|
|
| T |
8885019 |
caccctaaatcctaaaaataattattactattattcatccaaaaatagagtttgattcgcag----gagggtcaaataaaaacttttttaataatataag |
8885114 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataat-tcacatttcacttccctaaaaattacaataatattaacat |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||||||||||||| || | |||||||||| | ||||||| ||| |||||||||| |
|
|
| T |
8885115 |
aattcttccacaagatttaggatatcac----acttataacaaacataatatcgc-tttcacttccttgaaaattataatcatattaacat |
8885200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 235
Target Start/End: Complemental strand, 22397548 - 22397373
Alignment:
| Q |
61 |
ttattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctt-tctattaatataaaaattcttccacaagatttag |
159 |
Q |
| |
|
|||||||||||||||| | ||||||| | | ||| ||||||| | ||||||||||||||| || |||| | ||||| |||||||||| ||||||||| |
|
|
| T |
22397548 |
ttattactattatttaattaaaaatataactcgattcgcagcgcaaagtgtcaaataaaaattttctctaatgatatatgaattcttccataagatttag |
22397449 |
T |
|
| Q |
160 |
gataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||| ||| ||||| |
|
|
| T |
22397448 |
gatatcacgttgaaacataacaaacataattcagatttcacttcattaaaaattataataatattatcatcgaatc |
22397373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 17417536 - 17417721
Alignment:
| Q |
44 |
ctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaatt |
143 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||| |||||||| |||||| || ||||||||||||||| | |||| ||||||| |||| |
|
|
| T |
17417536 |
ctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcagcagaacgtgtcaaataaaaacttctctaataatataggaatt |
17417635 |
T |
|
| Q |
144 |
cttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacat |
229 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||| |
|
|
| T |
17417636 |
cttccacaagatttaggatatcacattgactcataacaaacataattcatatttcacttcattaaatattataataatattaacat |
17417721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 19729590 - 19729418
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| | ||||||| |||||||| ||||||||| ||||| | |||||||| | |||| ||||||| |
|
|
| T |
19729590 |
caccctaaatccaaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttctctaataatatagg |
19729491 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||| || | |||||||| ||||||| |
|
|
| T |
19729490 |
aattcttccacaagatttaggatatcacattgactcataacaaacataatccagacttcacttcattaaaaat |
19729418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 6820314 - 6820495
Alignment:
| Q |
54 |
aaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaag |
153 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| || || |||||||||||||||||||| || |||||||||| |||| ||||||||| |
|
|
| T |
6820314 |
aaaataattattactattatttatttaaaaattgagtaatatttatagtggagagtgtcaaataaaaactttcaaattaatataagaatttttccacaag |
6820413 |
T |
|
| Q |
154 |
atttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||||||||||||||||| | ||||||| |||||||||||||| ||||| |
|
|
| T |
6820414 |
atttaggataccacattgacacatagcaaacataattcacatttcacttctttgaaaattataataatattaacatcgaatc |
6820495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 3577425 - 3577246
Alignment:
| Q |
41 |
accctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaac------ctttctattaat |
134 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||| | ||||||| |||||||| ||||| | |||||||||| ||| |||||| |||| |
|
|
| T |
3577425 |
accctaaatcctaaaaataattactactattatttaattaaaaatagagtttgattcgcagtgaagagtgtcaactaattttttttttctttctcataat |
3577326 |
T |
|
| Q |
135 |
ataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaatta |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
3577325 |
ataagaattcttccacaagatttaggatatcacattacctcataacaaagataattcacatttcacttctttaaaaatta |
3577246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 17863394 - 17863199
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||| |||| ||| ||||||||| || |||| ||||||| | |||| ||||||| |
|
|
| T |
17863394 |
caccctaaatcccaaaaataattattactattatttaattaaaaatagagttcgattcgcagcggaaagagtcagctaaaaacttctctaataatatagg |
17863295 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||| ||||||| | |||||||||||||| ||||| |
|
|
| T |
17863294 |
aattcttccacaagatttaggatatcacattgactcataacaaacataattcagacttcacttcattaaaaatcataataatattaacatcgaatc |
17863199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 11284240 - 11284051
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||| |||| | || |||||||||||||||| ||| | |||||||| |
|
|
| T |
11284240 |
caccccaaatcccaaaaataattattactatgatttatttaaaaataaagtttgattcgcatcagaaagtgtcaaataaaaacttttatgataatataag |
11284141 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||| |||||||| || ||||||||||| | ||||||| |||||||| ||||||||||| |
|
|
| T |
11284140 |
aattcttccacaaaatttaggatatcacattgactc------aacataatacaaatttcacttccttgaaaattataataatatgaacattgaatc |
11284051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1043 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold1043
Description:
Target: scaffold1043; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 2565 - 2370
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||| |||||||| ||||||||| ||||| | |||||||| | |||| ||||||| |
|
|
| T |
2565 |
caccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttctctaataatatagg |
2466 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||| | |||||||| ||||||| | ||||| ||||| || ||||| |
|
|
| T |
2465 |
aattcttccacaagatttaggatatcacattgactcgtaacaaacataattcagacttcacttcattaaaaatcataataacattaaaatcgaatc |
2370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 195
Target Start/End: Complemental strand, 10736 - 10582
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
10736 |
caccctaaatcccaaac-taattattactattatttatccaaaaatagagtttgattcgcagtagagagtgtcaaataaaaacttttctattaatttaag |
10638 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacat |
195 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
10637 |
aattctcccacaagatttaggataccacattgactcataacagacataattcacat |
10582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 141185 - 141380
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||| |||||||| ||||||||| ||||| | |||||||| |||||| ||||||| |
|
|
| T |
141185 |
caccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttttctaataatatagg |
141284 |
T |
|
| Q |
140 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
235 |
Q |
| |
|
||||||||||||| |||||| ||| ||| |||||||||||||||||||||||| | |||||||| ||||||| | ||||| ||| |||| ||||| |
|
|
| T |
141285 |
aattcttccacaaaatttagtatatcacattgactcataacaaacataattcagacttcacttcattaaaaatcataataacattgacatcgaatc |
141380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 19258 - 19091
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
138 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||| | |||||||||||||| | ||||||||| ||| |
|
|
| T |
19258 |
caccttaaatcccaaaaataattattactattatttattcgaaaaacagagtttgattcgcagcggaaaatgtcaaataaaaacttgtctattaatttaa |
19159 |
T |
|
| Q |
139 |
aaattcttccacaagatttaggataccacgttgactcataacaaa---cataattcacatttcacttc |
203 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
19158 |
gaattcttccacaaaatttaggatatcacattgacttataaaaaaaaccataattcacatttcacttc |
19091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 20842447 - 20842353
Alignment:
| Q |
40 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaat |
134 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20842447 |
caccctaaatcccataaataattatcactattatttattcaaaaagagagtttgattcgcagcggagagtgtcaaataaaaacttttctattaat |
20842353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 195
Target Start/End: Complemental strand, 60459 - 60321
Alignment:
| Q |
56 |
aataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagat |
155 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| || |||||||||||||| |||| ||||| || |||| ||||||| |||||| | |||||| |
|
|
| T |
60459 |
aataattattcctattatttattcaaaaatagagtttaatttgcagcggagagtgtaaaat-aaaactttgctatgaatataagaattctccttcaagat |
60361 |
T |
|
| Q |
156 |
ttaggataccacgttgactcataacaaacataattcacat |
195 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| |||||| |
|
|
| T |
60360 |
ttaggacaccaaattgactcataataaacataactcacat |
60321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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